Experiment: 7H9 with Hygromycin B 0.0095 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0783c and Rv0784 are separated by 197 nucleotides Rv0784 and Rv0785 are separated by 15 nucleotides Rv0785 and Rv0786c are separated by 34 nucleotides Rv0786c and Rv0787 overlap by 6 nucleotides
Rv0783c: Rv0783c - Possible multidrug resistance integral membrane efflux protein EmrB, at 876,818 to 878,440
Rv0783c
Rv0784: Rv0784 - Conserved hypothetical protein, at 878,638 to 879,324
Rv0784
Rv0785: Rv0785 - Conserved protein, at 879,340 to 881,040
Rv0785
Rv0786c: Rv0786c - Conserved protein, at 881,075 to 881,464
Rv0786c
Rv0787: Rv0787 - Unknown protein, at 881,459 to 882,418
Rv0787
Position (kb) 879
880
881
882 Strain fitness (log2 ratio) -1
0
1 at 878.560 kb on + strand at 878.836 kb on + strand, within Rv0784 at 879.432 kb on - strand at 879.592 kb on - strand, within Rv0785 at 879.653 kb on - strand, within Rv0785 at 879.680 kb on - strand, within Rv0785 at 879.680 kb on - strand, within Rv0785 at 880.233 kb on + strand, within Rv0785 at 880.233 kb on + strand, within Rv0785 at 880.233 kb on + strand, within Rv0785 at 880.234 kb on - strand, within Rv0785 at 880.241 kb on - strand, within Rv0785 at 880.683 kb on + strand, within Rv0785 at 880.684 kb on - strand, within Rv0785 at 880.732 kb on + strand, within Rv0785 at 881.064 kb on + strand at 881.065 kb on - strand at 881.145 kb on + strand, within Rv0786c at 881.148 kb on + strand, within Rv0786c at 881.358 kb on + strand, within Rv0786c at 881.638 kb on + strand, within Rv0787 at 881.812 kb on + strand, within Rv0787 at 881.866 kb on + strand, within Rv0787
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hygromycin B 0.0095 mM remove 878,560 + -0.1 878,836 + Rv0784 0.29 +1.2 879,432 - -0.4 879,592 - Rv0785 0.15 -0.7 879,653 - Rv0785 0.18 -0.1 879,680 - Rv0785 0.20 -0.4 879,680 - Rv0785 0.20 -0.1 880,233 + Rv0785 0.52 +0.1 880,233 + Rv0785 0.52 -0.0 880,233 + Rv0785 0.52 -0.5 880,234 - Rv0785 0.53 -0.1 880,241 - Rv0785 0.53 +0.1 880,683 + Rv0785 0.79 -0.9 880,684 - Rv0785 0.79 -0.9 880,732 + Rv0785 0.82 -0.5 881,064 + -0.6 881,065 - +0.8 881,145 + Rv0786c 0.18 +0.4 881,148 + Rv0786c 0.19 +0.0 881,358 + Rv0786c 0.73 +0.0 881,638 + Rv0787 0.19 -0.7 881,812 + Rv0787 0.37 -0.1 881,866 + Rv0787 0.42 -1.2
Or see this region's nucleotide sequence