Experiment: 7H9 with Sulfaquinoxaline 0.097 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0850 and Rv0851c overlap by 4 nucleotides Rv0851c and Rv0852 are separated by 90 nucleotides Rv0852 and Rv0853c are separated by 40 nucleotides
Rv0850: Rv0850 - Putative transposase (fragment), at 947,312 to 947,644
Rv0850
Rv0851c: Rv0851c - Probable short-chain type dehydrogenase/reductase, at 947,641 to 948,468
Rv0851c
Rv0852: Rv0852 - Possible fatty-acid-CoA ligase FadD16 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase), at 948,559 to 949,395
Rv0852
Rv0853c: Rv0853c - Probable pyruvate or indole-3-pyruvate decarboxylase Pdc, at 949,436 to 951,118
Rv0853c
Position (kb) 948
949
950 Strain fitness (log2 ratio) -1
0
1 at 947.742 kb on - strand, within Rv0851c at 947.742 kb on - strand, within Rv0851c at 948.481 kb on + strand at 948.575 kb on - strand at 948.819 kb on + strand, within Rv0852 at 948.935 kb on + strand, within Rv0852 at 949.068 kb on + strand, within Rv0852 at 949.068 kb on + strand, within Rv0852 at 949.336 kb on + strand at 949.653 kb on + strand, within Rv0853c at 950.314 kb on - strand, within Rv0853c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Sulfaquinoxaline 0.097 mM remove 947,742 - Rv0851c 0.12 +1.5 947,742 - Rv0851c 0.12 -0.1 948,481 + -1.4 948,575 - -0.9 948,819 + Rv0852 0.31 -0.2 948,935 + Rv0852 0.45 -1.5 949,068 + Rv0852 0.61 -0.9 949,068 + Rv0852 0.61 -1.3 949,336 + -0.7 949,653 + Rv0853c 0.13 -0.2 950,314 - Rv0853c 0.52 +0.3
Or see this region's nucleotide sequence