Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0832

Experiment: 7H9 with Sulfaquinoxaline 0.097 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF868 and GFF869 are separated by 37 nucleotidesGFF869 and GFF870 are separated by 29 nucleotidesGFF870 and Rv0832 are separated by 664 nucleotidesRv0832 and Rv0833 overlap by 4 nucleotides GFF868 - tRNA-Glu, at 923,999 to 924,072 GFF868 GFF869 - tRNA-Asp, at 924,110 to 924,183 GFF869 GFF870 - tRNA-Phe, at 924,213 to 924,286 GFF870 Rv0832: Rv0832 - PE-PGRS family protein PE_PGRS12, at 924,951 to 925,364 Rv0832 Rv0833: Rv0833 - PE-PGRS family protein PE_PGRS13, at 925,361 to 927,610 Rv0833 Position (kb) 924 925 926Strain fitness (log2 ratio) -2 -1 0 1at 924.304 kb on - strandat 924.324 kb on + strandat 924.324 kb on + strandat 924.325 kb on - strandat 924.325 kb on - strandat 924.325 kb on - strandat 924.325 kb on - strandat 924.328 kb on + strandat 924.329 kb on - strandat 924.417 kb on - strandat 924.652 kb on + strandat 924.861 kb on + strandat 924.958 kb on - strandat 924.958 kb on - strandat 924.958 kb on - strandat 924.958 kb on - strandat 924.958 kb on - strandat 925.209 kb on + strand, within Rv0832at 925.210 kb on - strand, within Rv0832at 925.210 kb on - strand, within Rv0832

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Sulfaquinoxaline 0.097 mM
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924,304 - +0.3
924,324 + -0.3
924,324 + -0.4
924,325 - -0.2
924,325 - -0.1
924,325 - +0.4
924,325 - -0.3
924,328 + -2.6
924,329 - -0.7
924,417 - -1.3
924,652 + -0.3
924,861 + -0.1
924,958 - -0.7
924,958 - -0.2
924,958 - -0.5
924,958 - -0.4
924,958 - +0.2
925,209 + Rv0832 0.62 +0.8
925,210 - Rv0832 0.63 -0.1
925,210 - Rv0832 0.63 -1.8

Or see this region's nucleotide sequence