Experiment: 7H9 with Sulfaquinoxaline 0.097 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF868 and GFF869 are separated by 37 nucleotides GFF869 and GFF870 are separated by 29 nucleotides GFF870 and Rv0832 are separated by 664 nucleotides Rv0832 and Rv0833 overlap by 4 nucleotides
GFF868 - tRNA-Glu, at 923,999 to 924,072
GFF868
GFF869 - tRNA-Asp, at 924,110 to 924,183
GFF869
GFF870 - tRNA-Phe, at 924,213 to 924,286
GFF870
Rv0832: Rv0832 - PE-PGRS family protein PE_PGRS12, at 924,951 to 925,364
Rv0832
Rv0833: Rv0833 - PE-PGRS family protein PE_PGRS13, at 925,361 to 927,610
Rv0833
Position (kb)
924
925
926 Strain fitness (log2 ratio)
-2
-1
0
1 at 924.304 kb on - strand at 924.324 kb on + strand at 924.324 kb on + strand at 924.325 kb on - strand at 924.325 kb on - strand at 924.325 kb on - strand at 924.325 kb on - strand at 924.328 kb on + strand at 924.329 kb on - strand at 924.417 kb on - strand at 924.652 kb on + strand at 924.861 kb on + strand at 924.958 kb on - strand at 924.958 kb on - strand at 924.958 kb on - strand at 924.958 kb on - strand at 924.958 kb on - strand at 925.209 kb on + strand, within Rv0832 at 925.210 kb on - strand, within Rv0832 at 925.210 kb on - strand, within Rv0832
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Sulfaquinoxaline 0.097 mM remove 924,304 - +0.3 924,324 + -0.3 924,324 + -0.4 924,325 - -0.2 924,325 - -0.1 924,325 - +0.4 924,325 - -0.3 924,328 + -2.6 924,329 - -0.7 924,417 - -1.3 924,652 + -0.3 924,861 + -0.1 924,958 - -0.7 924,958 - -0.2 924,958 - -0.5 924,958 - -0.4 924,958 - +0.2 925,209 + Rv0832 0.62 +0.8 925,210 - Rv0832 0.63 -0.1 925,210 - Rv0832 0.63 -1.8
Or see this region's nucleotide sequence