Experiment: 7H9 with Sulfaquinoxaline 0.097 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0315 and Rv0316 are separated by 48 nucleotides Rv0316 and Rv0317c are separated by 23 nucleotides Rv0317c and GFF329 are separated by 260 nucleotides GFF329 and Rv0318c are separated by 30 nucleotides
Rv0315: Rv0315 - Possible beta-1,3-glucanase precursor, at 383,602 to 384,486
Rv0315
Rv0316: Rv0316 - Possible muconolactone isomerase, at 384,535 to 385,149
Rv0316
Rv0317c: Rv0317c - Possible glycerophosphoryl diester phosphodiesterase GlpQ2 (glycerophosphodiester phosphodiesterase), at 385,173 to 385,943
Rv0317c
GFF329 - tRNA-Gly, at 386,204 to 386,274
GFF329
Rv0318c: Rv0318c - Probable conserved integral membrane protein, at 386,305 to 387,099
Rv0318c
Position (kb) 385
386 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 384.265 kb on + strand, within Rv0315 at 384.265 kb on + strand, within Rv0315 at 384.266 kb on - strand, within Rv0315 at 384.266 kb on - strand, within Rv0315 at 384.302 kb on - strand, within Rv0315 at 384.302 kb on - strand, within Rv0315 at 384.376 kb on + strand, within Rv0315 at 384.377 kb on - strand, within Rv0315 at 384.377 kb on - strand, within Rv0315 at 384.484 kb on + strand at 384.512 kb on + strand at 384.573 kb on + strand at 384.653 kb on + strand, within Rv0316 at 384.654 kb on - strand, within Rv0316 at 384.879 kb on + strand, within Rv0316 at 384.879 kb on + strand, within Rv0316 at 384.880 kb on - strand, within Rv0316 at 385.174 kb on + strand at 385.175 kb on - strand at 385.359 kb on + strand, within Rv0317c at 385.421 kb on - strand, within Rv0317c at 385.421 kb on - strand, within Rv0317c at 385.421 kb on - strand, within Rv0317c at 385.484 kb on + strand, within Rv0317c at 385.617 kb on - strand, within Rv0317c at 385.766 kb on + strand, within Rv0317c at 385.767 kb on - strand, within Rv0317c at 385.788 kb on + strand, within Rv0317c at 385.825 kb on + strand, within Rv0317c at 385.826 kb on - strand, within Rv0317c at 385.983 kb on + strand at 385.983 kb on + strand at 386.075 kb on - strand at 386.294 kb on - strand at 386.327 kb on + strand at 386.328 kb on - strand at 386.466 kb on + strand, within Rv0318c at 386.522 kb on - strand, within Rv0318c at 386.560 kb on - strand, within Rv0318c at 386.714 kb on - strand, within Rv0318c at 386.800 kb on + strand, within Rv0318c at 386.867 kb on - strand, within Rv0318c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Sulfaquinoxaline 0.097 mM remove 384,265 + Rv0315 0.75 -2.0 384,265 + Rv0315 0.75 -0.5 384,266 - Rv0315 0.75 +0.1 384,266 - Rv0315 0.75 -1.8 384,302 - Rv0315 0.79 +0.4 384,302 - Rv0315 0.79 -0.9 384,376 + Rv0315 0.87 +0.0 384,377 - Rv0315 0.88 +0.3 384,377 - Rv0315 0.88 -1.3 384,484 + -0.2 384,512 + +0.1 384,573 + +0.2 384,653 + Rv0316 0.19 -0.8 384,654 - Rv0316 0.19 -0.4 384,879 + Rv0316 0.56 +0.5 384,879 + Rv0316 0.56 +0.0 384,880 - Rv0316 0.56 -1.2 385,174 + -0.1 385,175 - -0.6 385,359 + Rv0317c 0.24 -0.4 385,421 - Rv0317c 0.32 +0.0 385,421 - Rv0317c 0.32 +0.4 385,421 - Rv0317c 0.32 +3.0 385,484 + Rv0317c 0.40 -0.9 385,617 - Rv0317c 0.58 -0.8 385,766 + Rv0317c 0.77 -0.2 385,767 - Rv0317c 0.77 +0.6 385,788 + Rv0317c 0.80 +0.2 385,825 + Rv0317c 0.85 +2.4 385,826 - Rv0317c 0.85 +0.1 385,983 + -0.3 385,983 + +0.4 386,075 - -0.0 386,294 - +0.5 386,327 + -1.9 386,328 - +1.2 386,466 + Rv0318c 0.20 -0.0 386,522 - Rv0318c 0.27 -0.1 386,560 - Rv0318c 0.32 -0.7 386,714 - Rv0318c 0.51 +1.8 386,800 + Rv0318c 0.62 -0.8 386,867 - Rv0318c 0.71 -0.5
Or see this region's nucleotide sequence