Experiment: 7H9 with Sulfaquinoxaline 0.097 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0064 and Rv0064A are separated by 29 nucleotides Rv0064A and Rv0065 overlap by 8 nucleotides Rv0065 and Rv0066c are separated by 51 nucleotides
Rv0064: Rv0064 - Probable conserved transmembrane protein, at 68,620 to 71,559
Rv0064
Rv0064A: Rv0064A - Possible antitoxin VapB1, at 71,589 to 71,828
Rv0064A
Rv0065: Rv0065 - Possible toxin VapC1, at 71,821 to 72,222
Rv0065
Rv0066c: Rv0066c - Probable isocitrate dehydrogenase [NADP] Icd2 (oxalosuccinate decarboxylase) (IDH) (NADP+-specific ICDH) (IDP), at 72,274 to 74,511
Rv0066c
Position (kb) 71
72
73 Strain fitness (log2 ratio) -1
0
1
2 at 70.933 kb on + strand, within Rv0064 at 70.988 kb on + strand, within Rv0064 at 71.143 kb on + strand, within Rv0064 at 71.143 kb on + strand, within Rv0064 at 71.144 kb on - strand, within Rv0064 at 71.144 kb on - strand, within Rv0064 at 71.300 kb on + strand at 71.679 kb on + strand, within Rv0064A at 71.679 kb on + strand, within Rv0064A at 71.679 kb on + strand, within Rv0064A at 71.679 kb on + strand, within Rv0064A at 71.680 kb on - strand, within Rv0064A at 71.680 kb on - strand, within Rv0064A at 71.680 kb on - strand, within Rv0064A at 71.834 kb on + strand at 71.835 kb on - strand at 72.032 kb on - strand, within Rv0065 at 72.077 kb on - strand, within Rv0065 at 72.089 kb on + strand, within Rv0065
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Sulfaquinoxaline 0.097 mM remove 70,933 + Rv0064 0.79 -0.6 70,988 + Rv0064 0.81 -0.7 71,143 + Rv0064 0.86 -0.5 71,143 + Rv0064 0.86 +0.0 71,144 - Rv0064 0.86 -0.2 71,144 - Rv0064 0.86 -0.1 71,300 + -0.3 71,679 + Rv0064A 0.38 -0.2 71,679 + Rv0064A 0.38 -0.9 71,679 + Rv0064A 0.38 +0.7 71,679 + Rv0064A 0.38 -0.2 71,680 - Rv0064A 0.38 -0.3 71,680 - Rv0064A 0.38 -0.3 71,680 - Rv0064A 0.38 +2.5 71,834 + -0.3 71,835 - +0.7 72,032 - Rv0065 0.52 -0.4 72,077 - Rv0065 0.64 -1.1 72,089 + Rv0065 0.67 +0.8
Or see this region's nucleotide sequence