Experiment: 7H9 with Sulfamethizole 0.026 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0529 and Rv0530 are separated by 41 nucleotides Rv0530 and Rv0530A overlap by 4 nucleotides Rv0530A and Rv0531 are separated by 46 nucleotides Rv0531 and Rv0532 are separated by 146 nucleotides
Rv0529: Rv0529 - Possible cytochrome C-type biogenesis protein CcsA, at 619,891 to 620,865
Rv0529
Rv0530: Rv0530 - Conserved protein, at 620,907 to 622,124
Rv0530
Rv0530A: Rv0530A - Conserved protein, at 622,121 to 622,282
Rv0530A
Rv0531: Rv0531 - Possible conserved membrane protein, at 622,329 to 622,646
Rv0531
Rv0532: Rv0532 - PE-PGRS family protein PE_PGRS6, at 622,793 to 624,577
Rv0532
Position (kb) 620
621
622
623 Strain fitness (log2 ratio) -2
-1
0
1
2 at 621.047 kb on + strand, within Rv0530 at 621.048 kb on - strand, within Rv0530 at 621.094 kb on - strand, within Rv0530 at 621.103 kb on - strand, within Rv0530 at 621.105 kb on + strand, within Rv0530 at 621.105 kb on + strand, within Rv0530 at 621.258 kb on + strand, within Rv0530 at 621.258 kb on + strand, within Rv0530 at 621.259 kb on - strand, within Rv0530 at 621.357 kb on + strand, within Rv0530 at 621.565 kb on - strand, within Rv0530 at 621.666 kb on + strand, within Rv0530 at 621.667 kb on - strand, within Rv0530 at 621.699 kb on + strand, within Rv0530 at 621.699 kb on + strand, within Rv0530 at 621.700 kb on - strand, within Rv0530 at 621.700 kb on - strand, within Rv0530 at 621.700 kb on - strand, within Rv0530 at 621.764 kb on + strand, within Rv0530 at 622.122 kb on + strand at 622.122 kb on + strand at 622.123 kb on - strand at 622.132 kb on + strand at 622.132 kb on + strand at 622.133 kb on - strand at 622.239 kb on + strand, within Rv0530A at 622.240 kb on - strand, within Rv0530A at 622.240 kb on - strand, within Rv0530A at 622.240 kb on - strand, within Rv0530A at 622.240 kb on - strand, within Rv0530A at 622.275 kb on + strand at 622.305 kb on - strand at 622.306 kb on + strand at 622.306 kb on + strand at 622.307 kb on - strand at 622.318 kb on - strand at 622.343 kb on + strand at 622.375 kb on + strand, within Rv0531 at 622.751 kb on + strand at 622.976 kb on + strand, within Rv0532 at 622.977 kb on - strand, within Rv0532 at 623.052 kb on - strand, within Rv0532 at 623.052 kb on - strand, within Rv0532 at 623.052 kb on - strand, within Rv0532
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Sulfamethizole 0.026 mM remove 621,047 + Rv0530 0.11 +1.8 621,048 - Rv0530 0.12 +0.8 621,094 - Rv0530 0.15 -0.2 621,103 - Rv0530 0.16 -0.2 621,105 + Rv0530 0.16 -0.4 621,105 + Rv0530 0.16 -0.1 621,258 + Rv0530 0.29 -1.0 621,258 + Rv0530 0.29 -0.3 621,259 - Rv0530 0.29 -0.7 621,357 + Rv0530 0.37 -0.2 621,565 - Rv0530 0.54 -0.1 621,666 + Rv0530 0.62 -0.3 621,667 - Rv0530 0.62 -1.5 621,699 + Rv0530 0.65 -0.4 621,699 + Rv0530 0.65 -0.6 621,700 - Rv0530 0.65 +0.2 621,700 - Rv0530 0.65 -0.1 621,700 - Rv0530 0.65 -0.3 621,764 + Rv0530 0.70 -0.6 622,122 + +0.1 622,122 + -2.2 622,123 - -0.3 622,132 + +0.1 622,132 + -0.1 622,133 - +0.9 622,239 + Rv0530A 0.73 +0.1 622,240 - Rv0530A 0.73 +0.0 622,240 - Rv0530A 0.73 -1.0 622,240 - Rv0530A 0.73 -0.1 622,240 - Rv0530A 0.73 -0.3 622,275 + +0.9 622,305 - -1.5 622,306 + -0.3 622,306 + +1.5 622,307 - -0.3 622,318 - -0.2 622,343 + +0.0 622,375 + Rv0531 0.14 -0.8 622,751 + +0.6 622,976 + Rv0532 0.10 -0.7 622,977 - Rv0532 0.10 +0.1 623,052 - Rv0532 0.15 -0.5 623,052 - Rv0532 0.15 +0.8 623,052 - Rv0532 0.15 -0.1
Or see this region's nucleotide sequence