Experiment: 7H9 with Pretomanid 0.213 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0572c and Rv0573c are separated by 467 nucleotides Rv0573c and Rv0574c are separated by 9 nucleotides
Rv0572c: Rv0572c - Hypothetical protein, at 665,042 to 665,383
Rv0572c
Rv0573c: Rv0573c - Nicotinic acid phosphoribosyltransferase PncB2, at 665,851 to 667,242
Rv0573c
Rv0574c: Rv0574c - Conserved hypothetical protein, at 667,252 to 668,394
Rv0574c
Position (kb) 665
666
667
668 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 664.861 kb on - strand at 664.919 kb on + strand at 664.920 kb on - strand at 664.925 kb on - strand at 664.973 kb on + strand at 665.045 kb on + strand at 665.046 kb on - strand at 665.133 kb on + strand, within Rv0572c at 665.134 kb on - strand, within Rv0572c at 665.134 kb on - strand, within Rv0572c at 665.212 kb on - strand, within Rv0572c at 665.214 kb on + strand, within Rv0572c at 665.214 kb on + strand, within Rv0572c at 665.215 kb on - strand, within Rv0572c at 665.338 kb on + strand, within Rv0572c at 665.339 kb on - strand, within Rv0572c at 665.419 kb on + strand at 665.420 kb on - strand at 665.488 kb on - strand at 665.492 kb on - strand at 665.543 kb on + strand at 665.543 kb on + strand at 665.543 kb on + strand at 665.543 kb on + strand at 665.544 kb on - strand at 665.544 kb on - strand at 665.546 kb on - strand at 665.670 kb on + strand at 665.670 kb on + strand at 665.670 kb on + strand at 665.829 kb on + strand at 665.972 kb on + strand at 666.260 kb on + strand, within Rv0573c at 666.261 kb on - strand, within Rv0573c at 666.539 kb on - strand, within Rv0573c at 666.548 kb on + strand, within Rv0573c at 666.549 kb on - strand, within Rv0573c at 666.549 kb on - strand, within Rv0573c at 666.717 kb on - strand, within Rv0573c at 667.028 kb on + strand, within Rv0573c at 667.104 kb on - strand at 667.254 kb on - strand at 667.267 kb on + strand at 667.472 kb on + strand, within Rv0574c at 667.473 kb on - strand, within Rv0574c at 667.473 kb on - strand, within Rv0574c at 667.473 kb on - strand, within Rv0574c at 667.524 kb on - strand, within Rv0574c at 667.572 kb on - strand, within Rv0574c at 667.572 kb on - strand, within Rv0574c at 667.572 kb on - strand, within Rv0574c at 667.572 kb on - strand, within Rv0574c at 667.573 kb on + strand, within Rv0574c at 667.573 kb on + strand, within Rv0574c at 667.574 kb on - strand, within Rv0574c at 667.574 kb on - strand, within Rv0574c at 667.676 kb on + strand, within Rv0574c at 667.677 kb on - strand, within Rv0574c at 667.709 kb on - strand, within Rv0574c at 668.087 kb on + strand, within Rv0574c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Pretomanid 0.213 ug/mL remove 664,861 - -0.3 664,919 + -1.7 664,920 - -0.1 664,925 - +0.4 664,973 + +1.3 665,045 + -0.4 665,046 - -1.1 665,133 + Rv0572c 0.27 -0.3 665,134 - Rv0572c 0.27 -0.5 665,134 - Rv0572c 0.27 +2.9 665,212 - Rv0572c 0.50 +0.0 665,214 + Rv0572c 0.50 +0.9 665,214 + Rv0572c 0.50 -0.2 665,215 - Rv0572c 0.51 -0.5 665,338 + Rv0572c 0.87 -0.1 665,339 - Rv0572c 0.87 -0.1 665,419 + +0.9 665,420 - +0.4 665,488 - -0.4 665,492 - -0.2 665,543 + -0.1 665,543 + -0.5 665,543 + -0.1 665,543 + -0.2 665,544 - -0.3 665,544 - -0.4 665,546 - -0.1 665,670 + +0.2 665,670 + +0.6 665,670 + -0.4 665,829 + +0.1 665,972 + +0.9 666,260 + Rv0573c 0.29 -0.5 666,261 - Rv0573c 0.29 -0.4 666,539 - Rv0573c 0.49 -2.4 666,548 + Rv0573c 0.50 -0.5 666,549 - Rv0573c 0.50 -0.6 666,549 - Rv0573c 0.50 -1.5 666,717 - Rv0573c 0.62 +0.1 667,028 + Rv0573c 0.85 -1.3 667,104 - +1.9 667,254 - -1.0 667,267 + +0.7 667,472 + Rv0574c 0.19 -0.3 667,473 - Rv0574c 0.19 -1.7 667,473 - Rv0574c 0.19 -0.7 667,473 - Rv0574c 0.19 -0.6 667,524 - Rv0574c 0.24 -1.7 667,572 - Rv0574c 0.28 +0.2 667,572 - Rv0574c 0.28 -0.0 667,572 - Rv0574c 0.28 -0.2 667,572 - Rv0574c 0.28 -1.2 667,573 + Rv0574c 0.28 -1.6 667,573 + Rv0574c 0.28 -0.8 667,574 - Rv0574c 0.28 +0.1 667,574 - Rv0574c 0.28 +0.2 667,676 + Rv0574c 0.37 -0.4 667,677 - Rv0574c 0.37 -0.1 667,709 - Rv0574c 0.40 -0.4 668,087 + Rv0574c 0.73 +0.2
Or see this region's nucleotide sequence