Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3262

Experiment: 7H9 with Pretomanid 0.213 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Pretomanid 0.213 ug/mL
3,640,741	+		Rv3261	0.20	+3.9
3,640,742	-		Rv3261	0.20	+4.7
3,640,742	-		Rv3261	0.20	+2.1
3,640,742	-		Rv3261	0.20	+4.5
3,641,003	+		Rv3261	0.46	+5.4
3,641,887	+		Rv3262	0.26	+4.5
3,642,060	+		Rv3262	0.39	+3.0
3,642,061	-		Rv3262	0.39	+2.6
3,642,526	+		Rv3262	0.74	+3.2
3,643,037	+				+0.5
3,643,114	+				+0.2
3,643,114	+				-1.7
3,643,115	-				-0.3
3,643,219	+				+0.5
3,643,220	-				+0.9
3,643,240	-				-0.4
3,643,240	-				+1.1
3,643,240	-				+0.2
3,643,304	-				-0.4
3,643,306	+				+0.4
3,643,306	+				-0.1
3,643,306	+				-0.8
3,643,307	-				+0.6
3,643,507	-		Rv3263	0.20	+0.1
3,643,634	+		Rv3263	0.27	+0.1
3,643,764	-		Rv3263	0.35	+0.4
3,643,764	-		Rv3263	0.35	+1.2
3,643,807	-		Rv3263	0.38	-0.2