Experiment: 7H9 with Pretomanid 0.213 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0545c and Rv0546c are separated by 119 nucleotides Rv0546c and Rv0547c are separated by 62 nucleotides Rv0547c and Rv0548c are separated by 95 nucleotides
Rv0545c: Rv0545c - Probable low-affinity inorganic phosphate transporter integral membrane protein PitA, at 636,210 to 637,463
Rv0545c
Rv0546c: Rv0546c - Conserved protein, at 637,583 to 637,969
Rv0546c
Rv0547c: Rv0547c - Possible oxidoreductase, at 638,032 to 638,916
Rv0547c
Rv0548c: Rv0548c - Naphthoate synthase MenB (dihydroxynaphthoic acid synthetase) (DHNA synthetase), at 639,012 to 639,956
Rv0548c
Position (kb) 638
639 Strain fitness (log2 ratio) -1
0
1
2 at 637.326 kb on + strand, within Rv0545c at 637.529 kb on - strand at 637.552 kb on - strand at 637.552 kb on - strand at 637.552 kb on - strand at 637.563 kb on - strand at 637.563 kb on - strand at 637.600 kb on + strand at 637.869 kb on + strand, within Rv0546c at 637.982 kb on - strand at 638.210 kb on + strand, within Rv0547c at 638.210 kb on + strand, within Rv0547c at 638.211 kb on - strand, within Rv0547c at 638.255 kb on + strand, within Rv0547c at 638.256 kb on - strand, within Rv0547c at 638.256 kb on - strand, within Rv0547c at 638.256 kb on - strand, within Rv0547c at 638.400 kb on + strand, within Rv0547c at 638.462 kb on + strand, within Rv0547c at 638.462 kb on + strand, within Rv0547c at 638.463 kb on - strand, within Rv0547c at 638.463 kb on - strand, within Rv0547c at 638.465 kb on + strand, within Rv0547c at 638.465 kb on + strand, within Rv0547c at 638.465 kb on + strand, within Rv0547c at 638.465 kb on + strand, within Rv0547c at 638.465 kb on + strand, within Rv0547c at 638.466 kb on - strand, within Rv0547c at 638.697 kb on + strand, within Rv0547c at 638.930 kb on - strand at 638.930 kb on - strand at 638.947 kb on - strand at 638.947 kb on - strand at 638.990 kb on - strand at 639.013 kb on + strand at 639.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Pretomanid 0.213 ug/mL remove 637,326 + Rv0545c 0.89 +0.9 637,529 - +2.0 637,552 - +0.5 637,552 - +0.3 637,552 - +0.5 637,563 - +0.5 637,563 - -0.4 637,600 + +0.4 637,869 + Rv0546c 0.74 +0.8 637,982 - +0.0 638,210 + Rv0547c 0.20 +0.4 638,210 + Rv0547c 0.20 +0.2 638,211 - Rv0547c 0.20 -0.9 638,255 + Rv0547c 0.25 +0.4 638,256 - Rv0547c 0.25 +1.0 638,256 - Rv0547c 0.25 -1.1 638,256 - Rv0547c 0.25 -0.7 638,400 + Rv0547c 0.42 +0.5 638,462 + Rv0547c 0.49 +0.2 638,462 + Rv0547c 0.49 -0.4 638,463 - Rv0547c 0.49 -0.5 638,463 - Rv0547c 0.49 +0.1 638,465 + Rv0547c 0.49 +0.2 638,465 + Rv0547c 0.49 +1.2 638,465 + Rv0547c 0.49 -0.1 638,465 + Rv0547c 0.49 -0.2 638,465 + Rv0547c 0.49 -0.3 638,466 - Rv0547c 0.49 +0.2 638,697 + Rv0547c 0.75 +0.8 638,930 - +0.2 638,930 - -0.1 638,947 - -1.3 638,947 - -0.4 638,990 - -0.3 639,013 + -0.2 639,020 - +0.3
Or see this region's nucleotide sequence