Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3048c

Experiment: 7H9 with para-aminosalicylic 0.086 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with para-aminosalicylic 0.086 ug/mL
3,407,578	+		Rv3046c	0.70	-1.7
3,407,878	+				-0.7
3,407,879	-				-1.5
3,408,051	+		Rv3047c	0.10	-0.2
3,408,051	+		Rv3047c	0.10	-0.1
3,408,052	-		Rv3047c	0.11	-1.0
3,408,052	-		Rv3047c	0.11	-0.4
3,408,127	+		Rv3047c	0.37	+0.7
3,408,128	-		Rv3047c	0.37	+0.1
3,408,211	+		Rv3047c	0.66	-0.1
3,408,326	+				-0.1
3,408,326	+				-0.3
3,408,326	+				-2.1
3,408,329	+				-0.1
3,408,329	+				-1.0
3,408,330	-				+1.2
3,408,330	-				+0.5
3,408,333	+				-0.2
3,408,333	+				-0.6
3,408,334	-				-0.7
3,408,334	-				-0.4
3,408,334	-				+0.6
3,408,334	-				-0.1
3,408,334	-				-0.2
3,408,334	-				+0.3
3,408,337	+				+0.3
3,408,338	-				-1.0
3,408,405	+				+0.0
3,408,405	+				+0.2
3,408,405	+				-0.1
3,408,405	+				-0.6
3,408,406	-				-0.9
3,409,359	-				-0.0
3,409,431	-				-0.4
3,409,431	-				-0.7
3,409,451	+				-0.3
3,409,452	-				+1.2
3,409,510	+				-2.8
3,409,511	-				+1.4
3,409,663	+				+2.8
3,409,808	-		Rv3049c	0.19	-0.2
3,409,808	-		Rv3049c	0.19	-0.2
3,409,984	+		Rv3049c	0.30	-0.5
3,409,984	+		Rv3049c	0.30	-0.2
3,409,984	+		Rv3049c	0.30	-0.2
3,409,984	+		Rv3049c	0.30	-0.9
3,409,984	+		Rv3049c	0.30	-0.2
3,409,984	+		Rv3049c	0.30	+0.4
3,409,984	+		Rv3049c	0.30	-0.5
3,409,985	-		Rv3049c	0.30	+0.5
3,409,985	-		Rv3049c	0.30	+0.4
3,409,988	+		Rv3049c	0.30	+0.8
3,409,988	+		Rv3049c	0.30	+0.3
3,409,988	+		Rv3049c	0.30	-0.4
3,409,988	+		Rv3049c	0.30	+0.1
3,409,988	+		Rv3049c	0.30	-0.1
3,409,989	-		Rv3049c	0.30	-0.6
3,409,989	-		Rv3049c	0.30	-1.1
3,409,989	-		Rv3049c	0.30	-0.4
3,409,989	-		Rv3049c	0.30	-0.3
3,409,990	+		Rv3049c	0.31	-0.5
3,409,990	+		Rv3049c	0.31	-0.4
3,409,990	+		Rv3049c	0.31	-0.3
3,409,990	+		Rv3049c	0.31	-0.4
3,409,991	-		Rv3049c	0.31	+0.1
3,409,991	-		Rv3049c	0.31	+0.5
3,410,020	+		Rv3049c	0.32	-0.1
3,410,147	-		Rv3049c	0.41	+0.2
3,410,147	-		Rv3049c	0.41	+0.0
3,410,147	-		Rv3049c	0.41	+0.3
3,410,149	+		Rv3049c	0.41	-0.2
3,410,149	+		Rv3049c	0.41	+0.2
3,410,149	+		Rv3049c	0.41	-0.1
3,410,149	+		Rv3049c	0.41	-0.6
3,410,149	+		Rv3049c	0.41	-1.4
3,410,150	-		Rv3049c	0.41	+0.1
3,410,150	-		Rv3049c	0.41	-0.4
3,410,150	-		Rv3049c	0.41	+1.0
3,410,150	-		Rv3049c	0.41	+0.8
3,410,154	-		Rv3049c	0.41	+0.3
3,410,240	+		Rv3049c	0.46	+0.1
3,410,241	-		Rv3049c	0.46	-1.4
3,410,241	-		Rv3049c	0.46	-0.5
3,410,241	-		Rv3049c	0.46	-0.2
3,410,246	-		Rv3049c	0.47	-0.4
3,410,254	+		Rv3049c	0.47	+0.2