Experiment: 7H9 with para-aminosalicylic 0.086 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0889c and Rv0890c are separated by 86 nucleotides Rv0890c and Rv0891c are separated by 1 nucleotides
Rv0889c: Rv0889c - Probable citrate synthase II CitA, at 988,740 to 989,861
Rv0889c
Rv0890c: Rv0890c - Probable transcriptional regulatory protein (probably LuxR-family), at 989,948 to 992,596
Rv0890c
Rv0891c: Rv0891c - Possible transcriptional regulatory protein, at 992,598 to 993,455
Rv0891c
Position (kb) 989
990
991
992
993 Strain fitness (log2 ratio) -1
0
1
2
3 at 989.104 kb on + strand, within Rv0889c at 989.470 kb on + strand, within Rv0889c at 989.470 kb on + strand, within Rv0889c at 989.498 kb on - strand, within Rv0889c at 989.733 kb on + strand, within Rv0889c at 989.862 kb on - strand at 989.898 kb on - strand at 989.982 kb on - strand at 989.982 kb on - strand at 989.990 kb on + strand at 990.189 kb on + strand at 990.189 kb on + strand at 990.189 kb on + strand at 990.189 kb on + strand at 990.190 kb on - strand at 990.438 kb on + strand, within Rv0890c at 990.677 kb on - strand, within Rv0890c at 990.744 kb on + strand, within Rv0890c at 990.744 kb on + strand, within Rv0890c at 990.744 kb on + strand, within Rv0890c at 990.744 kb on + strand, within Rv0890c at 990.745 kb on - strand, within Rv0890c at 990.745 kb on - strand, within Rv0890c at 990.774 kb on + strand, within Rv0890c at 990.774 kb on + strand, within Rv0890c at 990.819 kb on - strand, within Rv0890c at 990.846 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.868 kb on + strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.869 kb on - strand, within Rv0890c at 990.870 kb on + strand, within Rv0890c at 990.870 kb on + strand, within Rv0890c at 990.870 kb on + strand, within Rv0890c at 990.870 kb on + strand, within Rv0890c at 990.870 kb on + strand, within Rv0890c at 990.871 kb on - strand, within Rv0890c at 990.872 kb on + strand, within Rv0890c at 990.872 kb on + strand, within Rv0890c at 990.872 kb on + strand, within Rv0890c at 990.872 kb on + strand, within Rv0890c at 990.873 kb on - strand, within Rv0890c at 990.873 kb on - strand, within Rv0890c at 990.873 kb on - strand, within Rv0890c at 990.983 kb on - strand, within Rv0890c at 991.085 kb on + strand, within Rv0890c at 991.144 kb on + strand, within Rv0890c at 991.177 kb on - strand, within Rv0890c at 991.200 kb on + strand, within Rv0890c at 991.373 kb on + strand, within Rv0890c at 991.635 kb on + strand, within Rv0890c at 991.636 kb on - strand, within Rv0890c at 991.636 kb on - strand, within Rv0890c at 991.636 kb on - strand, within Rv0890c at 991.638 kb on + strand, within Rv0890c at 991.639 kb on - strand, within Rv0890c at 992.082 kb on - strand, within Rv0890c at 992.205 kb on - strand, within Rv0890c at 992.255 kb on + strand, within Rv0890c at 992.285 kb on + strand, within Rv0890c at 992.285 kb on + strand, within Rv0890c at 992.605 kb on - strand at 992.605 kb on - strand at 992.605 kb on - strand at 992.916 kb on + strand, within Rv0891c at 992.917 kb on - strand, within Rv0891c at 992.937 kb on + strand, within Rv0891c at 992.938 kb on - strand, within Rv0891c at 992.938 kb on - strand, within Rv0891c at 992.939 kb on + strand, within Rv0891c at 992.940 kb on - strand, within Rv0891c at 992.940 kb on - strand, within Rv0891c at 992.943 kb on + strand, within Rv0891c at 992.943 kb on + strand, within Rv0891c at 992.943 kb on + strand, within Rv0891c at 993.029 kb on + strand, within Rv0891c at 993.029 kb on + strand, within Rv0891c at 993.030 kb on - strand, within Rv0891c at 993.216 kb on + strand, within Rv0891c at 993.341 kb on + strand, within Rv0891c at 993.342 kb on - strand, within Rv0891c at 993.434 kb on + strand at 993.477 kb on - strand at 993.526 kb on + strand at 993.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with para-aminosalicylic 0.086 ug/mL remove 989,104 + Rv0889c 0.32 -0.4 989,470 + Rv0889c 0.65 +0.7 989,470 + Rv0889c 0.65 +0.6 989,498 - Rv0889c 0.68 -0.5 989,733 + Rv0889c 0.89 -0.2 989,862 - +0.0 989,898 - +0.2 989,982 - +2.8 989,982 - +0.1 989,990 + -0.0 990,189 + -0.2 990,189 + +0.2 990,189 + -0.7 990,189 + +0.4 990,190 - -0.6 990,438 + Rv0890c 0.18 +0.8 990,677 - Rv0890c 0.28 -0.3 990,744 + Rv0890c 0.30 +0.1 990,744 + Rv0890c 0.30 +0.0 990,744 + Rv0890c 0.30 -0.0 990,744 + Rv0890c 0.30 -0.4 990,745 - Rv0890c 0.30 +0.5 990,745 - Rv0890c 0.30 +0.1 990,774 + Rv0890c 0.31 -0.3 990,774 + Rv0890c 0.31 +0.4 990,819 - Rv0890c 0.33 +0.4 990,846 + Rv0890c 0.34 -0.0 990,868 + Rv0890c 0.35 +0.4 990,868 + Rv0890c 0.35 +0.1 990,868 + Rv0890c 0.35 -0.4 990,868 + Rv0890c 0.35 -1.2 990,868 + Rv0890c 0.35 +0.7 990,868 + Rv0890c 0.35 +0.2 990,868 + Rv0890c 0.35 -0.9 990,869 - Rv0890c 0.35 +0.2 990,869 - Rv0890c 0.35 +0.5 990,869 - Rv0890c 0.35 -0.0 990,869 - Rv0890c 0.35 -0.1 990,869 - Rv0890c 0.35 +0.3 990,869 - Rv0890c 0.35 -0.5 990,869 - Rv0890c 0.35 -0.4 990,869 - Rv0890c 0.35 +0.2 990,870 + Rv0890c 0.35 -0.7 990,870 + Rv0890c 0.35 -0.1 990,870 + Rv0890c 0.35 -1.6 990,870 + Rv0890c 0.35 -0.2 990,870 + Rv0890c 0.35 +0.1 990,871 - Rv0890c 0.35 -0.1 990,872 + Rv0890c 0.35 -0.2 990,872 + Rv0890c 0.35 +0.9 990,872 + Rv0890c 0.35 -0.4 990,872 + Rv0890c 0.35 +0.0 990,873 - Rv0890c 0.35 -0.3 990,873 - Rv0890c 0.35 +2.5 990,873 - Rv0890c 0.35 -0.6 990,983 - Rv0890c 0.39 +0.0 991,085 + Rv0890c 0.43 -0.8 991,144 + Rv0890c 0.45 -0.7 991,177 - Rv0890c 0.46 -0.6 991,200 + Rv0890c 0.47 +0.5 991,373 + Rv0890c 0.54 +0.4 991,635 + Rv0890c 0.64 +0.2 991,636 - Rv0890c 0.64 -0.2 991,636 - Rv0890c 0.64 -0.3 991,636 - Rv0890c 0.64 +0.7 991,638 + Rv0890c 0.64 +0.8 991,639 - Rv0890c 0.64 -0.2 992,082 - Rv0890c 0.81 -0.0 992,205 - Rv0890c 0.85 +0.2 992,255 + Rv0890c 0.87 +1.8 992,285 + Rv0890c 0.88 +1.1 992,285 + Rv0890c 0.88 +0.2 992,605 - +0.2 992,605 - -0.3 992,605 - -1.1 992,916 + Rv0891c 0.37 -0.1 992,917 - Rv0891c 0.37 -0.2 992,937 + Rv0891c 0.40 -0.7 992,938 - Rv0891c 0.40 -0.4 992,938 - Rv0891c 0.40 -0.3 992,939 + Rv0891c 0.40 +0.6 992,940 - Rv0891c 0.40 +0.2 992,940 - Rv0891c 0.40 -0.5 992,943 + Rv0891c 0.40 +1.8 992,943 + Rv0891c 0.40 +1.4 992,943 + Rv0891c 0.40 -0.4 993,029 + Rv0891c 0.50 -0.2 993,029 + Rv0891c 0.50 +1.8 993,030 - Rv0891c 0.50 +0.2 993,216 + Rv0891c 0.72 -0.1 993,341 + Rv0891c 0.87 -0.8 993,342 - Rv0891c 0.87 +0.1 993,434 + +0.0 993,477 - +1.3 993,526 + -0.5 993,527 - +0.4
Or see this region's nucleotide sequence