Experiment: 7H9 with Meropenem 9.6 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3714c and Rv3715c are separated by 67 nucleotides Rv3715c and Rv3716c are separated by 11 nucleotides Rv3716c and Rv3717 are separated by 134 nucleotides Rv3717 and Rv3718c are separated by 41 nucleotides
Rv3714c: Rv3714c - Conserved hypothetical protein, at 4,158,931 to 4,159,821
Rv3714c
Rv3715c: Rv3715c - Probable recombination protein RecR, at 4,159,889 to 4,160,500
Rv3715c
Rv3716c: Rv3716c - Conserved protein, at 4,160,512 to 4,160,913
Rv3716c
Rv3717: Rv3717 - Conserved hypothetical protein, at 4,161,048 to 4,161,773
Rv3717
Rv3718c: Rv3718c - Conserved protein, at 4,161,815 to 4,162,258
Rv3718c
Position (kb) 4160
4161 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4159.594 kb on - strand, within Rv3714c at 4159.600 kb on + strand, within Rv3714c at 4159.601 kb on - strand, within Rv3714c at 4159.679 kb on + strand, within Rv3714c at 4159.679 kb on + strand, within Rv3714c at 4159.680 kb on - strand, within Rv3714c at 4159.680 kb on - strand, within Rv3714c at 4159.680 kb on - strand, within Rv3714c at 4159.680 kb on - strand, within Rv3714c at 4160.029 kb on - strand, within Rv3715c at 4160.193 kb on + strand, within Rv3715c at 4160.399 kb on + strand, within Rv3715c at 4160.572 kb on - strand, within Rv3716c at 4161.000 kb on + strand at 4161.019 kb on + strand at 4161.019 kb on + strand at 4161.052 kb on + strand at 4161.052 kb on + strand at 4161.053 kb on - strand at 4161.491 kb on - strand, within Rv3717 at 4161.491 kb on - strand, within Rv3717 at 4161.567 kb on + strand, within Rv3717 at 4161.568 kb on - strand, within Rv3717 at 4161.568 kb on - strand, within Rv3717 at 4161.589 kb on - strand, within Rv3717
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Meropenem 9.6 ug/mL remove 4,159,594 - Rv3714c 0.74 +0.1 4,159,600 + Rv3714c 0.75 -0.6 4,159,601 - Rv3714c 0.75 -0.0 4,159,679 + Rv3714c 0.84 +0.3 4,159,679 + Rv3714c 0.84 +0.1 4,159,680 - Rv3714c 0.84 +0.5 4,159,680 - Rv3714c 0.84 +0.0 4,159,680 - Rv3714c 0.84 -0.5 4,159,680 - Rv3714c 0.84 -0.9 4,160,029 - Rv3715c 0.23 -0.8 4,160,193 + Rv3715c 0.50 +0.3 4,160,399 + Rv3715c 0.83 +0.3 4,160,572 - Rv3716c 0.15 +0.6 4,161,000 + +1.1 4,161,019 + -0.4 4,161,019 + +0.5 4,161,052 + -2.0 4,161,052 + -1.2 4,161,053 - -1.5 4,161,491 - Rv3717 0.61 -3.2 4,161,491 - Rv3717 0.61 -1.6 4,161,567 + Rv3717 0.71 -2.2 4,161,568 - Rv3717 0.72 -1.3 4,161,568 - Rv3717 0.72 -1.2 4,161,589 - Rv3717 0.75 -0.7
Or see this region's nucleotide sequence