Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3470c

Experiment: 7H9 with Meropenem 9.6 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Meropenem 9.6 ug/mL
3,886,292	-		Rv3469c	0.22	+0.1
3,886,539	+		Rv3469c	0.46	+0.1
3,886,576	+		Rv3469c	0.50	-0.4
3,886,577	-		Rv3469c	0.50	-0.4
3,886,751	+		Rv3469c	0.67	-0.0
3,886,751	+		Rv3469c	0.67	-0.0
3,886,752	-		Rv3469c	0.67	+1.4
3,886,752	-		Rv3469c	0.67	+0.0
3,886,870	-		Rv3469c	0.79	-1.6
3,886,870	-		Rv3469c	0.79	+0.3
3,887,019	+				-0.1
3,887,019	+				+0.4
3,887,483	+		Rv3470c	0.20	+0.5
3,887,483	+		Rv3470c	0.20	+1.8
3,887,483	+		Rv3470c	0.20	+0.0
3,887,994	+		Rv3470c	0.51	+0.1
3,887,995	-		Rv3470c	0.51	-0.2
3,888,020	+		Rv3470c	0.53	+0.1
3,888,021	-		Rv3470c	0.53	+0.4
3,888,246	-		Rv3470c	0.66	+1.1
3,888,523	+		Rv3470c	0.83	+0.2
3,888,738	-				+1.2
3,888,746	+				-0.3
3,888,863	-		Rv3471c	0.10	+0.5
3,888,866	+		Rv3471c	0.11	-0.5
3,888,910	+		Rv3471c	0.19	+0.1
3,888,910	+		Rv3471c	0.19	-0.4
3,888,910	+		Rv3471c	0.19	-0.1
3,888,911	-		Rv3471c	0.19	+0.1
3,888,911	-		Rv3471c	0.19	-0.7
3,889,393	+				-0.2
3,889,393	+				+0.2
3,889,528	+		Rv3472	0.33	+0.0
3,889,528	+		Rv3472	0.33	-0.5
3,889,536	+		Rv3472	0.34	+0.2
3,889,593	+		Rv3472	0.46	-0.5
3,889,662	+		Rv3472	0.59	+0.5