Experiment: 7H9 with Meropenem 9.6 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0840c and Rv0841 are separated by 275 nucleotides Rv0841 and Rv0842 are separated by 276 nucleotides
Rv0840c: Rv0840c - Probable proline iminopeptidase Pip (prolyl aminopeptidase) (pap), at 936,457 to 937,317
Rv0840c
Rv0841: Rv0841 - Probable conserved transmembrane protein, at 937,593 to 937,835
Rv0841
Rv0842: Rv0842 - Probable conserved integral membrane protein, at 938,112 to 939,404
Rv0842
Position (kb) 937
938 Strain fitness (log2 ratio) -1
0
1
2 at 936.797 kb on + strand, within Rv0840c at 936.797 kb on + strand, within Rv0840c at 936.797 kb on + strand, within Rv0840c at 936.998 kb on + strand, within Rv0840c at 937.114 kb on + strand, within Rv0840c at 937.114 kb on + strand, within Rv0840c at 937.114 kb on + strand, within Rv0840c at 937.115 kb on - strand, within Rv0840c at 937.205 kb on + strand, within Rv0840c at 937.205 kb on + strand, within Rv0840c at 937.205 kb on + strand, within Rv0840c at 937.237 kb on + strand at 937.237 kb on + strand at 937.238 kb on - strand at 937.238 kb on - strand at 937.238 kb on - strand at 937.238 kb on - strand at 937.238 kb on - strand at 937.534 kb on - strand at 937.676 kb on - strand, within Rv0841 at 937.676 kb on - strand, within Rv0841 at 937.711 kb on - strand, within Rv0841 at 937.947 kb on + strand at 937.948 kb on - strand at 937.948 kb on - strand at 937.948 kb on - strand at 938.075 kb on - strand at 938.118 kb on + strand at 938.119 kb on - strand at 938.250 kb on + strand, within Rv0842 at 938.307 kb on + strand, within Rv0842 at 938.383 kb on + strand, within Rv0842 at 938.431 kb on + strand, within Rv0842 at 938.705 kb on + strand, within Rv0842 at 938.706 kb on - strand, within Rv0842 at 938.706 kb on - strand, within Rv0842 at 938.707 kb on + strand, within Rv0842 at 938.708 kb on - strand, within Rv0842 at 938.726 kb on + strand, within Rv0842 at 938.727 kb on - strand, within Rv0842
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Meropenem 9.6 ug/mL remove 936,797 + Rv0840c 0.39 -0.6 936,797 + Rv0840c 0.39 -0.9 936,797 + Rv0840c 0.39 +1.1 936,998 + Rv0840c 0.63 +0.1 937,114 + Rv0840c 0.76 +0.5 937,114 + Rv0840c 0.76 -0.3 937,114 + Rv0840c 0.76 +0.0 937,115 - Rv0840c 0.76 +0.4 937,205 + Rv0840c 0.87 +0.2 937,205 + Rv0840c 0.87 -0.4 937,205 + Rv0840c 0.87 +0.4 937,237 + +0.2 937,237 + +1.2 937,238 - +0.2 937,238 - +1.1 937,238 - +0.3 937,238 - -0.0 937,238 - -1.5 937,534 - -0.2 937,676 - Rv0841 0.34 +0.9 937,676 - Rv0841 0.34 +1.2 937,711 - Rv0841 0.49 -0.7 937,947 + -0.5 937,948 - -0.5 937,948 - -0.6 937,948 - -0.2 938,075 - +0.2 938,118 + -1.2 938,119 - +0.1 938,250 + Rv0842 0.11 +0.2 938,307 + Rv0842 0.15 +1.9 938,383 + Rv0842 0.21 -0.1 938,431 + Rv0842 0.25 -0.5 938,705 + Rv0842 0.46 +0.2 938,706 - Rv0842 0.46 +0.0 938,706 - Rv0842 0.46 +0.4 938,707 + Rv0842 0.46 -0.1 938,708 - Rv0842 0.46 -0.7 938,726 + Rv0842 0.47 +0.1 938,727 - Rv0842 0.48 +0.7
Or see this region's nucleotide sequence