Experiment: 7H9 with Meropenem 9.6 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0690c and Rv0691c overlap by 4 nucleotides Rv0691c and Rv0691A overlap by 9 nucleotides Rv0691A and Rv0692 overlap by 16 nucleotides Rv0692 and Rv0693 overlap by 4 nucleotides
Rv0690c: Rv0690c - Conserved hypothetical protein, at 790,024 to 791,073
Rv0690c
Rv0691c: Rv0691c - Probable transcriptional regulatory protein, at 791,070 to 791,666
Rv0691c
Rv0691A: Rv0691A - Mycofactocin precursor protein, at 791,658 to 791,846
Rv0691A
Rv0692: Rv0692 - Conserved hypothetical protein, at 791,831 to 792,160
Rv0692
Rv0693: Rv0693 - Probable coenzyme PQQ synthesis protein E PqqE (coenzyme PQQ synthesis protein III), at 792,157 to 793,332
Rv0693
Position (kb) 791
792 Strain fitness (log2 ratio) -1
0
1 at 790.101 kb on + strand at 790.102 kb on - strand at 790.105 kb on + strand at 790.106 kb on - strand at 790.106 kb on - strand at 790.106 kb on - strand at 790.106 kb on - strand at 790.113 kb on - strand at 790.244 kb on + strand, within Rv0690c at 790.245 kb on - strand, within Rv0690c at 790.413 kb on - strand, within Rv0690c at 790.577 kb on + strand, within Rv0690c at 790.628 kb on - strand, within Rv0690c at 790.998 kb on - strand at 790.998 kb on - strand at 791.167 kb on + strand, within Rv0691c at 791.284 kb on + strand, within Rv0691c at 791.284 kb on + strand, within Rv0691c at 791.284 kb on + strand, within Rv0691c at 791.285 kb on - strand, within Rv0691c at 791.285 kb on - strand, within Rv0691c at 791.299 kb on + strand, within Rv0691c at 791.841 kb on + strand at 791.917 kb on - strand, within Rv0692 at 791.980 kb on + strand, within Rv0692 at 791.980 kb on + strand, within Rv0692 at 791.981 kb on - strand, within Rv0692 at 792.099 kb on - strand, within Rv0692 at 792.222 kb on + strand at 792.222 kb on + strand at 792.222 kb on + strand at 792.223 kb on - strand at 792.238 kb on + strand at 792.252 kb on - strand at 792.358 kb on + strand, within Rv0693 at 792.419 kb on - strand, within Rv0693
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Meropenem 9.6 ug/mL remove 790,101 + -0.4 790,102 - +0.0 790,105 + +0.0 790,106 - +0.2 790,106 - +0.4 790,106 - +0.3 790,106 - +0.5 790,113 - -0.2 790,244 + Rv0690c 0.21 -0.1 790,245 - Rv0690c 0.21 -0.7 790,413 - Rv0690c 0.37 +0.4 790,577 + Rv0690c 0.53 -1.5 790,628 - Rv0690c 0.58 +0.1 790,998 - -0.2 790,998 - +0.3 791,167 + Rv0691c 0.16 -1.0 791,284 + Rv0691c 0.36 -0.3 791,284 + Rv0691c 0.36 +0.4 791,284 + Rv0691c 0.36 -0.7 791,285 - Rv0691c 0.36 -1.2 791,285 - Rv0691c 0.36 -1.5 791,299 + Rv0691c 0.38 -0.5 791,841 + +0.6 791,917 - Rv0692 0.26 +0.1 791,980 + Rv0692 0.45 +0.2 791,980 + Rv0692 0.45 +0.8 791,981 - Rv0692 0.45 +0.0 792,099 - Rv0692 0.81 -0.3 792,222 + +0.0 792,222 + +1.5 792,222 + +0.6 792,223 - +0.2 792,238 + +1.2 792,252 - +0.1 792,358 + Rv0693 0.17 +0.2 792,419 - Rv0693 0.22 +0.1
Or see this region's nucleotide sequence