Experiment: 7H9 with Meropenem 9.6 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0563 and Rv0564c are separated by 184 nucleotides Rv0564c and Rv0565c are separated by 60 nucleotides
Rv0563: Rv0563 - Probable protease transmembrane protein heat shock protein HtpX, at 653,879 to 654,739
Rv0563
Rv0564c: Rv0564c - Probable glycerol-3-phosphate dehydrogenase [NAD(P)+] GpdA1 (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependent dihydroxyacetone-phosphate reductase), at 654,924 to 655,949
Rv0564c
Rv0565c: Rv0565c - Probable monooxygenase, at 656,010 to 657,470
Rv0565c
Position (kb) 654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 654.021 kb on - strand, within Rv0563 at 654.155 kb on + strand, within Rv0563 at 654.468 kb on + strand, within Rv0563 at 654.740 kb on + strand at 654.740 kb on + strand at 654.741 kb on - strand at 654.876 kb on - strand at 654.876 kb on - strand at 654.926 kb on - strand at 654.977 kb on + strand at 654.978 kb on - strand at 654.978 kb on - strand at 654.978 kb on - strand at 654.979 kb on + strand at 654.979 kb on + strand at 655.592 kb on + strand, within Rv0564c at 655.593 kb on - strand, within Rv0564c at 655.796 kb on + strand, within Rv0564c at 655.961 kb on + strand at 656.056 kb on + strand at 656.089 kb on - strand at 656.146 kb on + strand at 656.147 kb on - strand at 656.353 kb on + strand, within Rv0565c at 656.353 kb on + strand, within Rv0565c at 656.447 kb on + strand, within Rv0565c at 656.487 kb on - strand, within Rv0565c at 656.602 kb on + strand, within Rv0565c at 656.602 kb on + strand, within Rv0565c at 656.602 kb on + strand, within Rv0565c at 656.603 kb on - strand, within Rv0565c at 656.939 kb on - strand, within Rv0565c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Meropenem 9.6 ug/mL remove 654,021 - Rv0563 0.16 -2.3 654,155 + Rv0563 0.32 -2.8 654,468 + Rv0563 0.68 -0.8 654,740 + -0.3 654,740 + +0.8 654,741 - -0.4 654,876 - -0.1 654,876 - -0.1 654,926 - -1.2 654,977 + -0.3 654,978 - -0.2 654,978 - +0.3 654,978 - +0.8 654,979 + -0.1 654,979 + -0.4 655,592 + Rv0564c 0.65 +0.0 655,593 - Rv0564c 0.65 +0.9 655,796 + Rv0564c 0.85 +0.5 655,961 + +0.3 656,056 + -0.7 656,089 - +0.6 656,146 + +0.5 656,147 - +1.0 656,353 + Rv0565c 0.23 -0.4 656,353 + Rv0565c 0.23 -0.9 656,447 + Rv0565c 0.30 -0.2 656,487 - Rv0565c 0.33 +0.8 656,602 + Rv0565c 0.41 -0.6 656,602 + Rv0565c 0.41 +0.4 656,602 + Rv0565c 0.41 +0.5 656,603 - Rv0565c 0.41 +0.3 656,939 - Rv0565c 0.64 +2.7
Or see this region's nucleotide sequence