Experiment: 7H9 with Meropenem 9.6 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0202c and Rv0203 are separated by 221 nucleotides Rv0203 and Rv0204c are separated by 51 nucleotides Rv0204c and Rv0205 are separated by 169 nucleotides
Rv0202c: Rv0202c - Probable conserved transmembrane transport protein MmpL11, at 238,392 to 241,292
Rv0202c
Rv0203: Rv0203 - Possible exported protein, at 241,514 to 241,924
Rv0203
Rv0204c: Rv0204c - Probable conserved transmembrane protein, at 241,976 to 243,214
Rv0204c
Rv0205: Rv0205 - Probable conserved transmembrane protein, at 243,384 to 244,487
Rv0205
Position (kb) 241
242
243
244 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 241.014 kb on + strand at 241.015 kb on - strand at 241.055 kb on - strand at 241.058 kb on + strand at 241.059 kb on - strand at 241.059 kb on - strand at 241.183 kb on - strand at 241.210 kb on + strand at 241.210 kb on + strand at 241.348 kb on - strand at 241.558 kb on - strand, within Rv0203 at 241.691 kb on + strand, within Rv0203 at 241.692 kb on - strand, within Rv0203 at 241.799 kb on - strand, within Rv0203 at 241.923 kb on - strand at 242.319 kb on - strand, within Rv0204c at 242.415 kb on - strand, within Rv0204c at 242.868 kb on + strand, within Rv0204c at 243.058 kb on + strand, within Rv0204c at 243.058 kb on + strand, within Rv0204c at 243.059 kb on - strand, within Rv0204c at 243.059 kb on - strand, within Rv0204c at 243.108 kb on + strand at 243.125 kb on + strand at 243.220 kb on + strand at 243.221 kb on - strand at 243.256 kb on - strand at 243.256 kb on - strand at 243.317 kb on + strand at 243.317 kb on + strand at 243.318 kb on - strand at 243.318 kb on - strand at 243.318 kb on - strand at 243.318 kb on - strand at 243.321 kb on + strand at 243.322 kb on - strand at 243.352 kb on + strand at 243.353 kb on - strand at 243.866 kb on + strand, within Rv0205 at 243.867 kb on - strand, within Rv0205 at 243.895 kb on + strand, within Rv0205 at 243.895 kb on + strand, within Rv0205 at 243.921 kb on + strand, within Rv0205 at 243.945 kb on + strand, within Rv0205 at 243.945 kb on + strand, within Rv0205 at 243.946 kb on - strand, within Rv0205 at 243.946 kb on - strand, within Rv0205
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Meropenem 9.6 ug/mL remove 241,014 + -0.6 241,015 - +2.1 241,055 - -0.2 241,058 + -0.6 241,059 - -0.9 241,059 - +0.1 241,183 - -0.7 241,210 + +0.2 241,210 + -0.9 241,348 - -0.5 241,558 - Rv0203 0.11 -1.3 241,691 + Rv0203 0.43 -0.6 241,692 - Rv0203 0.43 -0.4 241,799 - Rv0203 0.69 -0.1 241,923 - +0.1 242,319 - Rv0204c 0.28 -0.5 242,415 - Rv0204c 0.35 -1.0 242,868 + Rv0204c 0.72 -3.4 243,058 + Rv0204c 0.87 -2.8 243,058 + Rv0204c 0.87 -0.2 243,059 - Rv0204c 0.87 -2.8 243,059 - Rv0204c 0.87 -2.9 243,108 + -2.4 243,125 + -3.8 243,220 + +0.8 243,221 - -2.0 243,256 - -0.8 243,256 - -0.5 243,317 + -0.4 243,317 + -1.1 243,318 - -2.0 243,318 - +1.4 243,318 - +0.2 243,318 - -1.0 243,321 + -0.0 243,322 - -0.4 243,352 + +0.5 243,353 - -0.1 243,866 + Rv0205 0.44 +0.5 243,867 - Rv0205 0.44 -0.1 243,895 + Rv0205 0.46 -1.5 243,895 + Rv0205 0.46 -0.1 243,921 + Rv0205 0.49 -0.3 243,945 + Rv0205 0.51 -0.0 243,945 + Rv0205 0.51 -0.5 243,946 - Rv0205 0.51 -0.5 243,946 - Rv0205 0.51 -1.2
Or see this region's nucleotide sequence