Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1966

Experiment: 7H9 with Meropenem 9.6 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Meropenem 9.6 ug/mL
2,208,361	-		Rv1964	0.83	-0.0
2,208,363	-		Rv1964	0.83	-0.0
2,208,363	-		Rv1964	0.83	-0.1
2,208,363	-		Rv1964	0.83	+0.1
2,208,363	-		Rv1964	0.83	-1.2
2,208,741	+		Rv1965	0.29	-0.2
2,208,864	-		Rv1965	0.44	+0.2
2,208,942	+		Rv1965	0.53	-0.2
2,209,017	+		Rv1965	0.62	-0.3
2,209,018	-		Rv1965	0.63	-0.3
2,209,018	-		Rv1965	0.63	+2.0
2,209,050	+		Rv1965	0.67	-1.7
2,209,050	+		Rv1965	0.67	-0.2
2,209,051	-		Rv1965	0.67	-0.2
2,209,051	-		Rv1965	0.67	-0.3
2,209,051	-		Rv1965	0.67	-2.2
2,209,051	-		Rv1965	0.67	-0.6
2,209,071	+		Rv1965	0.69	+0.1
2,209,071	+		Rv1965	0.69	-0.8
2,209,072	-		Rv1965	0.69	+0.6
2,209,081	-		Rv1965	0.70	+0.2
2,209,081	-		Rv1965	0.70	+0.1
2,209,170	+		Rv1965	0.81	+1.8
2,209,170	+		Rv1965	0.81	-0.2
2,209,171	-		Rv1965	0.81	+1.8
2,209,171	-		Rv1965	0.81	+1.8
2,209,173	+		Rv1965	0.82	+0.8
2,209,174	-		Rv1965	0.82	+1.0
2,209,871	+		Rv1966	0.43	+0.0
2,209,975	+		Rv1966	0.51	-0.3
2,209,975	+		Rv1966	0.51	-0.7
2,209,976	-		Rv1966	0.51	-0.6
2,210,185	+		Rv1966	0.67	-0.2
2,210,186	-		Rv1966	0.67	+0.4
2,210,198	-		Rv1966	0.68	-0.2
2,210,246	-		Rv1966	0.72	-0.7
2,210,318	-		Rv1966	0.78	-1.0
2,210,504	-				-0.1
2,210,653	+				-0.8
2,210,654	-				-0.1
2,210,721	+		Rv1967	0.12	-0.6
2,210,722	-		Rv1967	0.12	+0.2
2,210,724	+		Rv1967	0.12	-1.2
2,210,724	+		Rv1967	0.12	-0.4
2,210,725	-		Rv1967	0.12	-1.0
2,210,725	-		Rv1967	0.12	-0.1
2,211,272	-		Rv1967	0.65	+0.4
2,211,447	+		Rv1967	0.82	-0.9
2,211,447	+		Rv1967	0.82	-0.4
2,211,447	+		Rv1967	0.82	-0.5
2,211,448	-		Rv1967	0.82	-0.4
2,211,483	+		Rv1967	0.86	+1.9
2,211,483	+		Rv1967	0.86	-1.8
2,211,511	-		Rv1967	0.88	-0.3
2,211,511	-		Rv1967	0.88	-0.7
2,211,531	+				-0.3
2,211,583	-				-0.4
2,211,583	-				+0.1