Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1822

Experiment: 7H9 with Meropenem 9.6 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Meropenem 9.6 ug/mL
2,068,457	-		Rv1821	0.82	-0.8
2,068,813	-				-1.4
2,068,813	-				-0.2
2,068,813	-				-1.7
2,068,813	-				+0.8
2,068,896	-				+4.1
2,068,909	-				-0.1
2,069,010	+				+0.2
2,069,010	+				-0.0
2,069,814	+		Rv1823	0.12	-0.2
2,070,160	+		Rv1823	0.50	-0.3
2,070,161	-		Rv1823	0.50	-0.3
2,070,430	+		Rv1823	0.79	-0.6
2,070,438	-		Rv1823	0.80	+0.0
2,070,530	+		Rv1823	0.90	-0.5
2,070,531	-		Rv1823	0.90	-1.0
2,070,623	+				+0.0
2,070,645	+				-0.1