Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3146

Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dimethyl Sulfoxide 1 vol%
3,511,104	-		Rv3144c	0.83	+0.3
3,511,416	+				-0.1
3,511,416	+				-0.3
3,511,427	+				-0.1
3,511,441	+				+0.6
3,511,441	+				-0.3
3,511,441	+				-1.4
3,511,530	+				-0.3
3,511,530	+				-0.1
3,511,530	+				+0.0
3,511,530	+				-0.4
3,511,530	+				-0.4
3,511,530	+				-0.2
3,511,531	-				+0.3
3,511,531	-				-0.1
3,511,531	-				+0.2
3,511,531	-				-0.4
3,511,576	+				-0.4
3,511,691	+				-0.3
3,511,691	+				+0.8
3,511,691	+				-0.1
3,511,692	-				-0.1
3,511,692	-				-0.4
3,511,695	+				-0.3
3,511,707	+				-0.6
3,511,825	+		Rv3145	0.37	+0.5
3,511,889	+		Rv3145	0.53	+2.1
3,511,889	+		Rv3145	0.53	-0.6
3,511,890	-		Rv3145	0.54	-0.1
3,511,890	-		Rv3145	0.54	-0.6
3,511,890	-		Rv3145	0.54	-0.3
3,511,893	-		Rv3145	0.55	-0.5
3,511,893	-		Rv3145	0.55	+0.1
3,511,893	-		Rv3145	0.55	+0.2
3,512,002	-		Rv3145	0.83	-0.7
3,512,033	+				-1.2
3,512,033	+				+2.1
3,512,034	-				+0.8
3,512,034	-				-1.8
3,512,034	-				-1.5
3,512,140	+		Rv3146	0.11	-0.6
3,512,338	+		Rv3146	0.47	-0.4
3,512,338	+		Rv3146	0.47	-0.8
3,512,459	-		Rv3146	0.69	-0.2
3,512,540	+		Rv3146	0.83	-0.3
3,512,540	+		Rv3146	0.83	-1.4
3,512,544	+		Rv3146	0.84	-1.3
3,512,927	-		Rv3147	0.42	-0.4
3,513,007	-		Rv3147	0.53	-0.8
3,513,263	-		Rv3147	0.89	+0.2
3,513,484	+		Rv3148	0.11	-0.8
3,513,484	+		Rv3148	0.11	+0.5