Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3123

Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dimethyl Sulfoxide 1 vol%
3,487,697	-				-0.9
3,487,770	-				-1.6
3,487,910	-				-0.7
3,487,910	-				-0.4
3,488,061	+				+0.6
3,488,062	-				-1.7
3,488,062	-				-1.6
3,488,065	+				-0.2
3,488,066	-				+0.5
3,488,182	+		Rv3122	0.20	+0.5
3,488,182	+		Rv3122	0.20	-0.1
3,488,237	-		Rv3122	0.31	-0.3
3,488,237	-		Rv3122	0.31	+0.0
3,488,237	-		Rv3122	0.31	-0.1
3,488,303	-		Rv3122	0.45	-0.1
3,488,396	-		Rv3122	0.65	-0.1
3,488,396	-		Rv3122	0.65	-0.2
3,488,396	-		Rv3122	0.65	+0.4
3,488,557	+				+1.0
3,488,557	+				-0.7
3,488,902	+		Rv3123	0.67	-1.6
3,488,902	+		Rv3123	0.67	-1.0
3,488,902	+		Rv3123	0.67	-0.5
3,488,903	-		Rv3123	0.67	-0.6
3,489,061	+				-0.3
3,489,061	+				-1.4
3,489,061	+				-0.6
3,489,061	+				-0.4
3,489,061	+				-0.5
3,489,061	+				+0.0
3,489,062	-				+0.1
3,489,062	-				+0.4
3,489,308	-				-0.6
3,489,522	+				-0.1
3,489,522	+				-0.1
3,489,522	+				-0.1
3,489,522	+				-0.4
3,489,523	-				+0.7
3,489,523	-				+1.9
3,489,538	-				-0.5
3,489,538	-				-0.1
3,489,698	+		Rv3124	0.22	-0.7
3,489,698	+		Rv3124	0.22	+0.7
3,489,698	+		Rv3124	0.22	-0.6