Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2934

Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dimethyl Sulfoxide 1 vol%
3,262,328	+				+1.8
3,262,773	+				+2.4
3,262,821	+		Rv2934	0.10	+2.3
3,262,856	-		Rv2934	0.11	+1.3
3,262,856	-		Rv2934	0.11	+2.3
3,262,856	-		Rv2934	0.11	+1.2
3,262,859	+		Rv2934	0.11	+1.9
3,263,151	-		Rv2934	0.16	+1.4
3,263,260	-		Rv2934	0.18	+1.8
3,263,328	+		Rv2934	0.20	+1.9
3,263,329	-		Rv2934	0.20	+1.7
3,263,670	+		Rv2934	0.26	+2.0
3,263,670	+		Rv2934	0.26	+1.8
3,263,670	+		Rv2934	0.26	+2.2
3,264,605	+		Rv2934	0.43	+2.7
3,264,606	-		Rv2934	0.43	+1.7
3,264,609	+		Rv2934	0.43	+2.8
3,264,610	-		Rv2934	0.43	+1.8
3,264,610	-		Rv2934	0.43	+2.9
3,264,788	+		Rv2934	0.46	+1.8
3,264,789	-		Rv2934	0.46	+2.0
3,264,832	-		Rv2934	0.47	+2.3
3,265,249	+		Rv2934	0.55	+1.7
3,265,250	-		Rv2934	0.55	+1.5
3,265,287	+		Rv2934	0.55	+1.8
3,265,573	+		Rv2934	0.61	+1.3
3,265,573	+		Rv2934	0.61	+2.1
3,265,573	+		Rv2934	0.61	+2.3
3,265,574	-		Rv2934	0.61	+1.9
3,265,574	-		Rv2934	0.61	+1.7
3,265,647	+		Rv2934	0.62	+2.6
3,265,648	-		Rv2934	0.62	+4.0
3,265,680	+		Rv2934	0.63	+1.9
3,265,680	+		Rv2934	0.63	+1.8
3,265,765	+		Rv2934	0.64	+1.9
3,265,765	+		Rv2934	0.64	+1.7
3,265,765	+		Rv2934	0.64	+2.2
3,265,787	-		Rv2934	0.65	+1.8
3,265,809	+		Rv2934	0.65	+2.3
3,265,809	+		Rv2934	0.65	+1.6
3,265,809	+		Rv2934	0.65	+2.1
3,265,810	-		Rv2934	0.65	+1.8
3,265,810	-		Rv2934	0.65	+1.8
3,265,810	-		Rv2934	0.65	+1.8
3,265,810	-		Rv2934	0.65	+1.9
3,265,850	-		Rv2934	0.66	+1.8
3,266,530	+		Rv2934	0.78	+1.8
3,266,531	-		Rv2934	0.78	+1.1
3,266,869	+		Rv2934	0.84	+1.5
3,266,870	-		Rv2934	0.84	+1.5
3,266,974	+		Rv2934	0.86	+2.0
3,267,098	-		Rv2934	0.88	+1.9
3,267,098	-		Rv2934	0.88	+2.0
3,267,264	+				+2.8
3,267,265	-				+1.9
3,267,265	-				+1.9
3,267,412	-				+1.4
3,267,412	-				+1.8
3,267,499	+				+3.0
3,267,499	+				+1.6
3,267,550	+				+1.7
3,267,551	-				+2.0
3,267,590	-				+1.9
3,267,590	-				+1.7
3,267,645	-				+1.4
3,267,708	-				+2.1
3,267,719	-				+2.7
3,267,730	-				+1.8
3,267,914	+				+1.1
3,267,915	-				+1.7
3,267,915	-				+1.9
3,267,915	-				+1.3
3,267,915	-				+1.5
3,267,915	-				+1.9
3,268,095	-				+1.7
3,268,682	+		Rv2935	0.21	+1.8
3,268,682	+		Rv2935	0.21	+1.9
3,268,683	-		Rv2935	0.21	+2.2
3,268,683	-		Rv2935	0.21	+1.8
3,268,683	-		Rv2935	0.21	+1.9
3,268,723	+		Rv2935	0.22	+2.6