Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2735c and Rv2736c are separated by 9 nucleotides Rv2736c and Rv2737c overlap by 35 nucleotides
Rv2734: Rv2734 - Conserved hypothetical protein, at 3,046,821 to 3,047,675
Rv2734
Rv2735c: Rv2735c - Conserved hypothetical protein, at 3,047,560 to 3,048,552
Rv2735c
Rv2736c: Rv2736c - Regulatory protein RecX, at 3,048,562 to 3,049,086
Rv2736c
Rv2737c: Rv2737c - RecA protein (recombinase A) [contains: endonuclease PI-MTUI (MTU RecA intein)]., at 3,049,052 to 3,051,424
Rv2737c
Position (kb)
3048
3049
3050 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3047.677 kb on + strand, within Rv2735c at 3047.771 kb on + strand, within Rv2735c at 3047.772 kb on - strand, within Rv2735c at 3047.841 kb on + strand, within Rv2735c at 3047.842 kb on - strand, within Rv2735c at 3047.842 kb on - strand, within Rv2735c at 3047.862 kb on + strand, within Rv2735c at 3047.873 kb on + strand, within Rv2735c at 3047.874 kb on - strand, within Rv2735c at 3047.874 kb on - strand, within Rv2735c at 3047.916 kb on + strand, within Rv2735c at 3047.916 kb on + strand, within Rv2735c at 3047.916 kb on + strand, within Rv2735c at 3047.933 kb on + strand, within Rv2735c at 3047.947 kb on + strand, within Rv2735c at 3047.947 kb on + strand, within Rv2735c at 3047.948 kb on - strand, within Rv2735c at 3047.948 kb on - strand, within Rv2735c at 3047.975 kb on - strand, within Rv2735c at 3047.999 kb on + strand, within Rv2735c at 3047.999 kb on + strand, within Rv2735c at 3047.999 kb on + strand, within Rv2735c at 3047.999 kb on + strand, within Rv2735c at 3048.000 kb on - strand, within Rv2735c at 3048.000 kb on - strand, within Rv2735c at 3048.086 kb on - strand, within Rv2735c at 3048.208 kb on + strand, within Rv2735c at 3048.208 kb on + strand, within Rv2735c at 3048.497 kb on + strand at 3048.508 kb on + strand at 3048.547 kb on - strand at 3048.728 kb on - strand, within Rv2736c at 3049.550 kb on + strand, within Rv2737c at 3049.551 kb on - strand, within Rv2737c at 3049.551 kb on - strand, within Rv2737c at 3049.551 kb on - strand, within Rv2737c at 3049.678 kb on - strand, within Rv2737c at 3049.678 kb on - strand, within Rv2737c at 3049.678 kb on - strand, within Rv2737c at 3049.678 kb on - strand, within Rv2737c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dimethyl Sulfoxide 1 vol% remove 3,047,677 + Rv2735c 0.12 -2.1 3,047,771 + Rv2735c 0.21 +0.1 3,047,772 - Rv2735c 0.21 -0.3 3,047,841 + Rv2735c 0.28 +0.7 3,047,842 - Rv2735c 0.28 +0.6 3,047,842 - Rv2735c 0.28 -0.6 3,047,862 + Rv2735c 0.30 -2.0 3,047,873 + Rv2735c 0.32 -1.0 3,047,874 - Rv2735c 0.32 +0.4 3,047,874 - Rv2735c 0.32 -0.2 3,047,916 + Rv2735c 0.36 -0.0 3,047,916 + Rv2735c 0.36 +1.8 3,047,916 + Rv2735c 0.36 -0.3 3,047,933 + Rv2735c 0.38 -1.3 3,047,947 + Rv2735c 0.39 -1.1 3,047,947 + Rv2735c 0.39 -0.3 3,047,948 - Rv2735c 0.39 +1.0 3,047,948 - Rv2735c 0.39 -1.6 3,047,975 - Rv2735c 0.42 -0.4 3,047,999 + Rv2735c 0.44 -0.2 3,047,999 + Rv2735c 0.44 +0.4 3,047,999 + Rv2735c 0.44 +0.3 3,047,999 + Rv2735c 0.44 -0.5 3,048,000 - Rv2735c 0.44 -1.2 3,048,000 - Rv2735c 0.44 +0.7 3,048,086 - Rv2735c 0.53 -0.4 3,048,208 + Rv2735c 0.65 +0.3 3,048,208 + Rv2735c 0.65 +0.3 3,048,497 + -0.1 3,048,508 + -1.2 3,048,547 - -0.1 3,048,728 - Rv2736c 0.32 -1.2 3,049,550 + Rv2737c 0.21 -0.4 3,049,551 - Rv2737c 0.21 -1.1 3,049,551 - Rv2737c 0.21 -0.9 3,049,551 - Rv2737c 0.21 +0.9 3,049,678 - Rv2737c 0.26 -1.6 3,049,678 - Rv2737c 0.26 +0.7 3,049,678 - Rv2737c 0.26 +0.3 3,049,678 - Rv2737c 0.26 -1.6
Or see this region's nucleotide sequence