Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2708c

Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dimethyl Sulfoxide 1 vol%
3,020,572	+				-0.0
3,020,572	+				-0.2
3,020,573	-				+2.0
3,020,626	+				-0.3
3,020,741	+		Rv2707	0.17	-1.3
3,020,741	+		Rv2707	0.17	-1.6
3,020,742	-		Rv2707	0.17	-0.7
3,021,026	+		Rv2707	0.46	+0.3
3,021,026	+		Rv2707	0.46	-0.8
3,021,026	+		Rv2707	0.46	-0.3
3,021,026	+		Rv2707	0.46	-1.0
3,021,027	-		Rv2707	0.47	-1.3
3,021,048	+		Rv2707	0.49	-0.9
3,021,048	+		Rv2707	0.49	-0.3
3,021,048	+		Rv2707	0.49	-1.4
3,021,091	-		Rv2707	0.53	-1.1
3,021,091	-		Rv2707	0.53	+0.3
3,021,140	+		Rv2707	0.58	-1.4
3,021,141	-		Rv2707	0.58	-1.1
3,021,163	-		Rv2707	0.61	-1.2
3,021,183	+		Rv2707	0.63	-1.7
3,021,183	+		Rv2707	0.63	-0.4
3,021,186	-		Rv2707	0.63	-0.9
3,021,199	-		Rv2707	0.64	-2.7
3,021,199	-		Rv2707	0.64	-0.7
3,021,199	-		Rv2707	0.64	-0.9
3,021,231	+		Rv2707	0.67	-1.8
3,021,249	+		Rv2707	0.69	-1.2
3,021,288	-		Rv2707	0.73	-1.4
3,021,314	+		Rv2707	0.76	-0.8
3,021,314	+		Rv2707	0.76	-2.3
3,021,315	-		Rv2707	0.76	+0.4
3,021,320	+		Rv2707	0.77	-0.7
3,021,320	+		Rv2707	0.77	-1.2
3,021,320	+		Rv2707	0.77	-0.3
3,021,321	-		Rv2707	0.77	-0.3
3,021,321	-		Rv2707	0.77	-1.8
3,021,321	-		Rv2707	0.77	-1.6
3,021,321	-		Rv2707	0.77	-1.6
3,021,354	+		Rv2707	0.80	-1.5
3,021,355	-		Rv2707	0.80	-0.7
3,021,497	+				+0.1
3,021,497	+				-0.4
3,021,498	-				-1.7
3,021,498	-				-0.6
3,021,498	-				-0.9
3,021,570	+				-0.6
3,021,570	+				-0.2
3,021,570	+				+0.1
3,021,702	+		Rv2708c	0.62	+0.4
3,021,712	-		Rv2708c	0.66	+0.1
3,021,763	+		Rv2708c	0.86	+1.3
3,021,764	-		Rv2708c	0.87	+2.0
3,021,787	+				-0.6
3,021,788	-				-0.3
3,021,788	-				+0.1
3,021,788	-				-0.4
3,021,850	+				-0.4
3,021,850	+				-0.3
3,021,850	+				-0.3
3,021,850	+				-0.3
3,021,850	+				-0.3
3,021,850	+				-0.3
3,021,851	-				-0.7
3,021,959	+		Rv2709	0.27	-1.7
3,021,959	+		Rv2709	0.27	-1.7
3,021,960	-		Rv2709	0.27	-0.0
3,021,988	+		Rv2709	0.33	-0.9
3,021,988	+		Rv2709	0.33	-1.9
3,021,988	+		Rv2709	0.33	-1.2
3,021,988	+		Rv2709	0.33	-1.4
3,021,989	-		Rv2709	0.34	+0.4
3,021,989	-		Rv2709	0.34	-1.0
3,021,989	-		Rv2709	0.34	-1.4
3,021,992	+		Rv2709	0.34	-0.9
3,022,773	+		Rv2710	0.32	+0.7