Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2605c
Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 7H9 with Dimethyl Sulfoxide 1 vol% |
---|---|---|---|---|---|
remove | |||||
2,931,604 | + | -0.3 | |||
2,931,604 | + | +0.4 | |||
2,931,604 | + | -0.6 | |||
2,931,604 | + | -0.5 | |||
2,931,605 | - | +2.0 | |||
2,931,605 | - | -0.1 | |||
2,931,895 | - | Rv2604c | 0.34 | +0.4 | |
2,932,440 | - | Rv2605c | 0.17 | +0.0 | |
2,932,440 | - | Rv2605c | 0.17 | +1.7 | |
2,932,789 | - | Rv2605c | 0.58 | +0.3 | |
2,932,846 | + | Rv2605c | 0.65 | -0.0 | |
2,932,985 | + | Rv2605c | 0.81 | +0.7 | |
2,932,985 | + | Rv2605c | 0.81 | -0.5 | |
2,933,032 | + | Rv2605c | 0.87 | +1.0 | |
2,933,033 | - | Rv2605c | 0.87 | +0.1 | |
2,933,460 | - | Rv2606c | 0.32 | +2.0 | |
2,933,757 | + | Rv2606c | 0.65 | +0.5 | |
2,933,758 | - | Rv2606c | 0.65 | +0.0 | |
2,933,758 | - | Rv2606c | 0.65 | +0.2 | |
2,933,758 | - | Rv2606c | 0.65 | +0.1 | |
2,933,815 | + | Rv2606c | 0.72 | -0.0 | |
2,933,816 | - | Rv2606c | 0.72 | -0.1 | |
2,934,055 | + | -0.3 | |||
2,934,092 | + | +0.1 | |||
2,934,093 | - | -0.4 | |||
2,934,093 | - | +0.1 | |||
2,934,097 | + | -0.2 | |||
2,934,097 | + | -0.4 |
Or see this region's nucleotide sequence