Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2011c

Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dimethyl Sulfoxide 1 vol%
2,257,865	+				-2.0
2,257,866	-				-0.5
2,258,008	+				+0.0
2,258,008	+				-0.2
2,258,008	+				-0.3
2,258,008	+				+1.0
2,258,008	+				+0.5
2,258,009	-				-0.2
2,258,102	+		Rv2009	0.30	+1.2
2,258,103	-		Rv2009	0.30	-0.0
2,258,270	+				-0.2
2,258,271	-				+0.1
2,258,271	-				+1.4
2,258,303	+				+1.3
2,258,544	+		Rv2010	0.68	-0.6
2,258,545	-		Rv2010	0.68	+0.0
2,258,545	-		Rv2010	0.68	+0.2
2,258,738	-				-0.5
2,258,747	+				-1.2
2,258,790	-				+0.1
2,259,229	+		Rv2011c	0.87	+1.6
2,259,230	-		Rv2011c	0.87	+2.0
2,259,230	-		Rv2011c	0.87	-0.1
2,259,250	+				+1.0
2,259,537	-		Rv2012	0.43	-2.1
2,259,548	+		Rv2012	0.45	-0.2
2,259,548	+		Rv2012	0.45	-0.5
2,259,549	-		Rv2012	0.45	+0.1
2,259,549	-		Rv2012	0.45	-0.7
2,259,710	+		Rv2012	0.78	-0.1
2,259,744	-		Rv2012	0.84	-0.6
2,259,744	-		Rv2012	0.84	-0.5
2,259,767	+		Rv2012	0.89	+0.4
2,259,767	+		Rv2012	0.89	-0.0
2,259,768	-		Rv2012	0.89	+1.4
2,259,768	-		Rv2012	0.89	-0.4
2,259,770	-		Rv2012	0.90	-0.3
2,260,023	-				+1.4
2,260,080	+				+0.5
2,260,081	-				+0.4
2,260,081	-				-1.4
2,260,171	+				+0.1
2,260,172	-				-1.7