Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1950c

Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dimethyl Sulfoxide 1 vol%
2,199,033	+				-0.4
2,199,034	-				-0.1
2,199,167	-				-0.2
2,199,267	+		Rv1949c	0.20	-0.2
2,199,306	+		Rv1949c	0.24	+0.1
2,199,306	+		Rv1949c	0.24	+0.9
2,199,306	+		Rv1949c	0.24	-0.3
2,199,307	-		Rv1949c	0.24	-1.1
2,199,499	+		Rv1949c	0.44	+0.0
2,199,499	+		Rv1949c	0.44	-0.2
2,199,546	+		Rv1949c	0.49	-0.3
2,199,547	-		Rv1949c	0.49	-0.3
2,199,547	-		Rv1949c	0.49	-0.7
2,199,698	+		Rv1949c	0.65	-0.4
2,199,698	+		Rv1949c	0.65	-1.5
2,199,721	-		Rv1949c	0.67	-0.1
2,199,907	+		Rv1949c	0.87	-0.4
2,199,907	+		Rv1949c	0.87	-0.2
2,199,908	-		Rv1949c	0.87	-2.0
2,199,908	-		Rv1949c	0.87	-2.1
2,199,999	+				-0.5
2,200,000	-				+0.2
2,200,000	-				+0.2
2,200,125	+		Rv1950c	0.66	-1.9
2,200,126	-		Rv1950c	0.67	-0.5
2,200,126	-		Rv1950c	0.67	+0.0
2,200,169	-		Rv1950c	0.89	-1.2
2,200,191	+				+0.2
2,200,192	-				-0.2
2,200,254	+		Rv1951c	0.22	-0.6
2,200,255	-		Rv1951c	0.22	-1.1
2,200,255	-		Rv1951c	0.22	+0.0
2,200,449	-		Rv1951c	0.87	-0.3
2,200,499	+				-0.7
2,200,510	+				-0.4
2,200,545	-				-0.1
2,200,617	-				+1.2
2,200,687	-				-0.8
2,200,691	-				+0.2
2,200,694	-				+1.2
2,200,694	-				+1.9
2,200,694	-				+0.4
2,200,694	-				-0.2
2,200,763	+		Rv1952	0.17	-0.5
2,200,859	+		Rv1952	0.62	-0.1
2,200,944	+				-0.3
2,200,944	+				-0.4
2,200,944	+				-0.6
2,200,945	-				-1.9
2,201,122	+		Rv1953	0.59	-2.6
2,201,123	-		Rv1953	0.59	+0.1
2,201,155	+		Rv1953	0.70	-1.2
2,201,155	+		Rv1953	0.70	-0.5
2,201,155	+		Rv1953	0.70	+1.1
2,201,155	+		Rv1953	0.70	+1.8
2,201,155	+		Rv1953	0.70	-1.0
2,201,156	-		Rv1953	0.70	-0.1
2,201,156	-		Rv1953	0.70	-0.4
2,201,156	-		Rv1953	0.70	+0.1