Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1520

Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dimethyl Sulfoxide 1 vol%
1,710,243	+		Rv1518	0.62	-0.3
1,710,244	-		Rv1518	0.62	-0.1
1,710,247	+		Rv1518	0.63	+0.4
1,710,814	-		Rv1519	0.30	-0.7
1,710,814	-		Rv1519	0.30	-1.1
1,710,814	-		Rv1519	0.30	+0.2
1,710,898	-		Rv1519	0.61	-0.1
1,711,034	-				-0.6
1,711,034	-				+0.0
1,711,050	-				+2.6
1,711,050	-				-0.7
1,711,050	-				-2.0
1,711,064	+				+0.0
1,711,065	-				-0.1
1,711,065	-				+0.2
1,711,167	+		Rv1520	0.13	-0.5
1,711,167	+		Rv1520	0.13	-0.5
1,711,168	-		Rv1520	0.13	-0.8
1,711,168	-		Rv1520	0.13	-0.2
1,711,168	-		Rv1520	0.13	+0.8
1,711,168	-		Rv1520	0.13	+0.0
1,711,168	-		Rv1520	0.13	-0.5
1,711,168	-		Rv1520	0.13	-0.2
1,711,175	+		Rv1520	0.14	-0.2
1,711,277	+		Rv1520	0.24	-0.3
1,711,338	+		Rv1520	0.30	+0.3
1,711,339	-		Rv1520	0.30	-0.4
1,711,339	-		Rv1520	0.30	+0.2
1,711,344	-		Rv1520	0.30	+0.0
1,711,344	-		Rv1520	0.30	-0.7
1,711,398	-		Rv1520	0.36	-0.1
1,711,398	-		Rv1520	0.36	-0.6
1,711,506	-		Rv1520	0.46	-0.4
1,711,523	+		Rv1520	0.48	-0.0
1,711,554	+		Rv1520	0.51	-0.3
1,711,554	+		Rv1520	0.51	+0.0
1,711,555	-		Rv1520	0.51	-0.7
1,711,562	+		Rv1520	0.51	-0.1
1,711,562	+		Rv1520	0.51	-0.3
1,711,563	-		Rv1520	0.51	-0.8
1,711,625	+		Rv1520	0.57	-0.3
1,711,626	-		Rv1520	0.57	-0.4
1,711,645	+		Rv1520	0.59	-0.3
1,711,645	+		Rv1520	0.59	+0.2
1,711,661	+		Rv1520	0.61	-1.0
1,711,662	-		Rv1520	0.61	-0.2
1,711,734	+		Rv1520	0.68	-0.5
1,711,735	-		Rv1520	0.68	-1.1
1,711,735	-		Rv1520	0.68	+1.5
1,711,881	+		Rv1520	0.82	-0.3
1,711,882	-		Rv1520	0.82	-0.8
1,712,044	+				-1.4
1,712,044	+				-0.4
1,712,045	-				+0.2
1,712,045	-				+0.7
1,712,045	-				-0.5
1,712,045	-				-0.5
1,712,066	+				-0.6
1,712,067	-				+0.0
1,712,067	-				-0.4
1,712,077	-				+0.5
1,712,097	-				-0.6
1,712,160	+				-0.0
1,712,160	+				-0.1
1,712,161	-				-0.8
1,712,161	-				+0.5
1,712,295	+				-0.4
1,712,295	+				+0.0
1,712,296	-				-0.3
1,712,296	-				-1.5
1,712,383	-				-0.0
1,712,472	-				+0.1
1,712,545	-		Rv1521	0.14	-0.1
1,712,692	+		Rv1521	0.22	-0.5