Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0867c and Rv0868c are separated by 447 nucleotides Rv0868c and Rv0869c are separated by 3 nucleotides Rv0869c and Rv0870c overlap by 4 nucleotides Rv0870c and Rv0871 are separated by 164 nucleotides
Rv0867c: Rv0867c - Possible resuscitation-promoting factor RpfA, at 964,312 to 965,535
Rv0867c
Rv0868c: Rv0868c - Probable molybdenum cofactor biosynthesis protein D 2 MoaD2 (molybdopterin converting factor small subunit) (molybdopterin [MPT] converting factor, subunit 1), at 965,983 to 966,261
Rv0868c
Rv0869c: Rv0869c - Probable molybdenum cofactor biosynthesis protein A2 MoaA2, at 966,265 to 967,347
Rv0869c
Rv0870c: Rv0870c - Possible conserved integral membrane protein, at 967,344 to 967,733
Rv0870c
Rv0871: Rv0871 - Probable cold shock-like protein B CspB, at 967,898 to 968,305
Rv0871
Position (kb) 966
967
968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 965.345 kb on + strand, within Rv0867c at 965.465 kb on - strand at 965.517 kb on + strand at 965.517 kb on + strand at 965.518 kb on - strand at 965.518 kb on - strand at 965.535 kb on + strand at 965.536 kb on - strand at 965.536 kb on - strand at 965.536 kb on - strand at 965.536 kb on - strand at 965.540 kb on + strand at 965.544 kb on + strand at 965.629 kb on - strand at 965.629 kb on - strand at 965.629 kb on - strand at 965.668 kb on - strand at 965.668 kb on - strand at 965.845 kb on + strand at 966.004 kb on + strand at 966.005 kb on - strand at 966.005 kb on - strand at 966.005 kb on - strand at 966.007 kb on + strand at 966.007 kb on + strand at 966.007 kb on + strand at 966.074 kb on + strand, within Rv0868c at 966.074 kb on + strand, within Rv0868c at 966.212 kb on + strand, within Rv0868c at 966.673 kb on - strand, within Rv0869c at 966.717 kb on - strand, within Rv0869c at 966.871 kb on - strand, within Rv0869c at 966.871 kb on - strand, within Rv0869c at 966.898 kb on - strand, within Rv0869c at 967.008 kb on + strand, within Rv0869c at 967.008 kb on + strand, within Rv0869c at 967.008 kb on + strand, within Rv0869c at 967.009 kb on - strand, within Rv0869c at 967.009 kb on - strand, within Rv0869c at 967.009 kb on - strand, within Rv0869c at 967.109 kb on - strand, within Rv0869c at 967.109 kb on - strand, within Rv0869c at 967.184 kb on + strand, within Rv0869c at 967.184 kb on + strand, within Rv0869c at 967.185 kb on - strand, within Rv0869c at 967.276 kb on + strand at 967.431 kb on + strand, within Rv0870c at 967.673 kb on - strand, within Rv0870c at 967.673 kb on - strand, within Rv0870c at 967.713 kb on - strand at 967.748 kb on + strand at 967.773 kb on + strand at 967.774 kb on - strand at 967.806 kb on + strand at 967.807 kb on - strand at 967.923 kb on - strand at 967.923 kb on - strand at 967.977 kb on - strand, within Rv0871 at 967.977 kb on - strand, within Rv0871
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dimethyl Sulfoxide 1 vol% remove 965,345 + Rv0867c 0.84 -0.1 965,465 - -0.3 965,517 + -1.2 965,517 + -0.4 965,518 - +1.4 965,518 - +1.1 965,535 + -1.1 965,536 - +0.0 965,536 - -0.2 965,536 - -0.4 965,536 - -0.6 965,540 + -0.0 965,544 + -0.6 965,629 - -0.7 965,629 - +1.4 965,629 - +0.4 965,668 - -0.2 965,668 - -1.0 965,845 + -0.4 966,004 + -1.3 966,005 - -0.4 966,005 - -0.2 966,005 - -0.4 966,007 + -0.3 966,007 + +0.1 966,007 + -0.5 966,074 + Rv0868c 0.33 -0.7 966,074 + Rv0868c 0.33 +0.2 966,212 + Rv0868c 0.82 +0.4 966,673 - Rv0869c 0.38 -0.2 966,717 - Rv0869c 0.42 -1.2 966,871 - Rv0869c 0.56 -0.3 966,871 - Rv0869c 0.56 +0.2 966,898 - Rv0869c 0.58 -1.6 967,008 + Rv0869c 0.69 -1.4 967,008 + Rv0869c 0.69 -0.6 967,008 + Rv0869c 0.69 -0.1 967,009 - Rv0869c 0.69 -0.6 967,009 - Rv0869c 0.69 -0.3 967,009 - Rv0869c 0.69 +2.0 967,109 - Rv0869c 0.78 -0.2 967,109 - Rv0869c 0.78 -1.4 967,184 + Rv0869c 0.85 -0.3 967,184 + Rv0869c 0.85 -0.3 967,185 - Rv0869c 0.85 -2.1 967,276 + -0.1 967,431 + Rv0870c 0.22 +1.5 967,673 - Rv0870c 0.84 -1.2 967,673 - Rv0870c 0.84 -3.1 967,713 - +0.3 967,748 + -2.8 967,773 + -0.1 967,774 - +2.0 967,806 + +0.1 967,807 - +0.1 967,923 - +1.7 967,923 - -0.0 967,977 - Rv0871 0.19 -0.1 967,977 - Rv0871 0.19 +0.5
Or see this region's nucleotide sequence