Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0610c and Rv0611c are separated by 51 nucleotides Rv0611c and Rv0612 overlap by 21 nucleotides Rv0612 and Rv0613c are separated by 18 nucleotides
Rv0610c: Rv0610c - Hypothetical protein, at 704,752 to 705,909
Rv0610c
Rv0611c: Rv0611c - Hypothetical protein, at 705,961 to 706,344
Rv0611c
Rv0612: Rv0612 - Conserved hypothetical protein, at 706,324 to 706,929
Rv0612
Rv0613c: Rv0613c - Unknown protein, at 706,948 to 709,515
Rv0613c
Position (kb) 706
707 Strain fitness (log2 ratio) -1
0
1
2 at 705.533 kb on + strand, within Rv0610c at 705.799 kb on + strand at 705.833 kb on - strand at 705.887 kb on - strand at 705.895 kb on + strand at 705.963 kb on - strand at 705.963 kb on - strand at 706.063 kb on - strand, within Rv0611c at 706.153 kb on + strand, within Rv0611c at 706.153 kb on + strand, within Rv0611c at 706.178 kb on + strand, within Rv0611c at 706.178 kb on + strand, within Rv0611c at 706.178 kb on + strand, within Rv0611c at 706.179 kb on - strand, within Rv0611c at 706.179 kb on - strand, within Rv0611c at 706.195 kb on - strand, within Rv0611c at 706.195 kb on - strand, within Rv0611c at 706.255 kb on + strand, within Rv0611c at 706.639 kb on + strand, within Rv0612 at 706.640 kb on - strand, within Rv0612 at 706.810 kb on + strand, within Rv0612 at 706.811 kb on - strand, within Rv0612 at 706.949 kb on + strand at 706.950 kb on - strand at 706.950 kb on - strand at 706.950 kb on - strand at 707.127 kb on - strand at 707.447 kb on + strand, within Rv0613c at 707.447 kb on + strand, within Rv0613c at 707.771 kb on - strand, within Rv0613c at 707.771 kb on - strand, within Rv0613c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dimethyl Sulfoxide 1 vol% remove 705,533 + Rv0610c 0.67 -0.6 705,799 + +0.7 705,833 - +2.0 705,887 - -0.2 705,895 + -0.3 705,963 - -0.2 705,963 - -0.1 706,063 - Rv0611c 0.27 -0.1 706,153 + Rv0611c 0.50 -0.2 706,153 + Rv0611c 0.50 -0.4 706,178 + Rv0611c 0.57 -0.3 706,178 + Rv0611c 0.57 +0.0 706,178 + Rv0611c 0.57 -1.3 706,179 - Rv0611c 0.57 -0.1 706,179 - Rv0611c 0.57 -1.2 706,195 - Rv0611c 0.61 +1.1 706,195 - Rv0611c 0.61 -1.6 706,255 + Rv0611c 0.77 -0.3 706,639 + Rv0612 0.52 -1.6 706,640 - Rv0612 0.52 -0.2 706,810 + Rv0612 0.80 -0.4 706,811 - Rv0612 0.80 -1.0 706,949 + +0.7 706,950 - +0.1 706,950 - +0.0 706,950 - -1.0 707,127 - -0.2 707,447 + Rv0613c 0.19 -0.8 707,447 + Rv0613c 0.19 -1.0 707,771 - Rv0613c 0.32 -0.5 707,771 - Rv0613c 0.32 +0.7
Or see this region's nucleotide sequence