Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0393 and Rv0394c are separated by 15 nucleotides Rv0394c and Rv0395 are separated by 98 nucleotides Rv0395 and Rv0396 are separated by 5 nucleotides Rv0396 and Rv0397 are separated by 73 nucleotides
Rv0393: Rv0393 - Conserved 13E12 repeat family protein, at 472,781 to 474,106
Rv0393
Rv0394c: Rv0394c - Possible secreted protein, at 474,122 to 474,841
Rv0394c
Rv0395: Rv0395 - Hypothetical protein, at 474,940 to 475,344
Rv0395
Rv0396: Rv0396 - Hypothetical protein, at 475,350 to 475,742
Rv0396
Rv0397: Rv0397 - Conserved 13E12 repeat family protein, at 475,816 to 476,184
Rv0397
Position (kb) 474
475 Strain fitness (log2 ratio) -2
-1
0
1
2 at 473.213 kb on + strand, within Rv0393 at 473.214 kb on - strand, within Rv0393 at 473.214 kb on - strand, within Rv0393 at 473.225 kb on + strand, within Rv0393 at 473.225 kb on + strand, within Rv0393 at 473.225 kb on + strand, within Rv0393 at 473.226 kb on - strand, within Rv0393 at 474.225 kb on + strand, within Rv0394c at 474.226 kb on - strand, within Rv0394c at 474.386 kb on - strand, within Rv0394c at 474.476 kb on - strand, within Rv0394c at 474.593 kb on - strand, within Rv0394c at 474.698 kb on + strand, within Rv0394c at 474.841 kb on + strand at 474.854 kb on - strand at 474.854 kb on - strand at 474.854 kb on - strand at 474.854 kb on - strand at 475.140 kb on + strand, within Rv0395 at 475.227 kb on + strand, within Rv0395 at 475.260 kb on - strand, within Rv0395 at 475.326 kb on - strand at 475.326 kb on - strand at 475.342 kb on + strand at 475.343 kb on - strand at 475.343 kb on - strand at 475.369 kb on + strand at 475.438 kb on - strand, within Rv0396 at 475.438 kb on - strand, within Rv0396
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dimethyl Sulfoxide 1 vol% remove 473,213 + Rv0393 0.33 -1.1 473,214 - Rv0393 0.33 +0.1 473,214 - Rv0393 0.33 -2.1 473,225 + Rv0393 0.33 -1.1 473,225 + Rv0393 0.33 +0.2 473,225 + Rv0393 0.33 -0.5 473,226 - Rv0393 0.34 +0.0 474,225 + Rv0394c 0.14 -0.4 474,226 - Rv0394c 0.14 -1.5 474,386 - Rv0394c 0.37 -0.5 474,476 - Rv0394c 0.49 -0.5 474,593 - Rv0394c 0.65 -0.6 474,698 + Rv0394c 0.80 +2.0 474,841 + +0.1 474,854 - +0.2 474,854 - -0.2 474,854 - -0.4 474,854 - +0.5 475,140 + Rv0395 0.49 -0.6 475,227 + Rv0395 0.71 -0.2 475,260 - Rv0395 0.79 -0.4 475,326 - +0.6 475,326 - +0.1 475,342 + +0.7 475,343 - -0.1 475,343 - +0.6 475,369 + +0.6 475,438 - Rv0396 0.22 +2.5 475,438 - Rv0396 0.22 +0.1
Or see this region's nucleotide sequence