Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0343 and Rv0344c are separated by 142 nucleotides Rv0344c and Rv0345 are separated by 108 nucleotides Rv0345 and Rv0346c are separated by 41 nucleotides
Rv0343: Rv0343 - Isoniazid inductible gene protein IniC, at 412,757 to 414,238
Rv0343
Rv0344c: Rv0344c - Probable lipoprotein LpqJ, at 414,381 to 414,941
Rv0344c
Rv0345: Rv0345 - Conserved hypothetical protein, at 415,050 to 415,460
Rv0345
Rv0346c: Rv0346c - Possible L-asparagine permease AnsP2 (L-asparagine transport protein), at 415,502 to 416,965
Rv0346c
Position (kb) 414
415 Strain fitness (log2 ratio) -1
0
1
2 at 413.803 kb on - strand, within Rv0343 at 413.836 kb on + strand, within Rv0343 at 413.836 kb on + strand, within Rv0343 at 413.836 kb on + strand, within Rv0343 at 413.836 kb on + strand, within Rv0343 at 413.837 kb on - strand, within Rv0343 at 413.904 kb on - strand, within Rv0343 at 414.169 kb on + strand at 414.369 kb on - strand at 414.490 kb on + strand, within Rv0344c at 414.491 kb on - strand, within Rv0344c at 414.692 kb on - strand, within Rv0344c at 414.792 kb on - strand, within Rv0344c at 414.800 kb on + strand, within Rv0344c at 414.886 kb on - strand at 414.946 kb on + strand at 414.946 kb on + strand at 414.967 kb on - strand at 414.975 kb on + strand at 414.981 kb on - strand at 415.001 kb on + strand at 415.002 kb on - strand at 415.034 kb on + strand at 415.035 kb on - strand at 415.105 kb on - strand, within Rv0345 at 415.184 kb on + strand, within Rv0345 at 415.185 kb on - strand, within Rv0345 at 415.185 kb on - strand, within Rv0345 at 415.426 kb on + strand at 415.426 kb on + strand at 415.427 kb on - strand at 415.594 kb on - strand at 415.668 kb on + strand, within Rv0346c at 415.669 kb on - strand, within Rv0346c at 415.932 kb on + strand, within Rv0346c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dimethyl Sulfoxide 1 vol% remove 413,803 - Rv0343 0.71 +0.0 413,836 + Rv0343 0.73 +0.9 413,836 + Rv0343 0.73 -0.3 413,836 + Rv0343 0.73 -0.4 413,836 + Rv0343 0.73 +0.4 413,837 - Rv0343 0.73 -0.3 413,904 - Rv0343 0.77 -0.1 414,169 + +1.2 414,369 - -1.2 414,490 + Rv0344c 0.19 -1.1 414,491 - Rv0344c 0.20 -1.1 414,692 - Rv0344c 0.55 +2.0 414,792 - Rv0344c 0.73 -0.5 414,800 + Rv0344c 0.75 -1.1 414,886 - -0.1 414,946 + -0.3 414,946 + +0.4 414,967 - -0.8 414,975 + -0.0 414,981 - +0.2 415,001 + -0.1 415,002 - -0.7 415,034 + -0.0 415,035 - +0.4 415,105 - Rv0345 0.13 -0.5 415,184 + Rv0345 0.33 -0.4 415,185 - Rv0345 0.33 -0.6 415,185 - Rv0345 0.33 -0.1 415,426 + +0.6 415,426 + +0.1 415,427 - +1.2 415,594 - -0.8 415,668 + Rv0346c 0.11 +0.6 415,669 - Rv0346c 0.11 +0.9 415,932 + Rv0346c 0.29 -0.7
Or see this region's nucleotide sequence