Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0134 and Rv0135c overlap by 30 nucleotides Rv0135c and Rv0136 are separated by 116 nucleotides
Rv0134: Rv0134 - Possible epoxide hydrolase EphF (epoxide hydratase) (arene-oxide hydratase), at 161,771 to 162,673
Rv0134
Rv0135c: Rv0135c - Possible transcriptional regulatory protein, at 162,644 to 163,249
Rv0135c
Rv0136: Rv0136 - Probable cytochrome P450 138 Cyp138, at 163,366 to 164,691
Rv0136
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1 at 161.702 kb on - strand at 161.702 kb on - strand at 161.702 kb on - strand at 161.702 kb on - strand at 161.756 kb on + strand at 161.756 kb on + strand at 161.756 kb on + strand at 161.878 kb on - strand, within Rv0134 at 162.011 kb on + strand, within Rv0134 at 162.013 kb on + strand, within Rv0134 at 162.013 kb on + strand, within Rv0134 at 162.013 kb on + strand, within Rv0134 at 162.013 kb on + strand, within Rv0134 at 162.014 kb on - strand, within Rv0134 at 162.211 kb on + strand, within Rv0134 at 162.212 kb on - strand, within Rv0134 at 162.212 kb on - strand, within Rv0134 at 162.212 kb on - strand, within Rv0134 at 162.212 kb on - strand, within Rv0134 at 162.280 kb on + strand, within Rv0134 at 162.280 kb on + strand, within Rv0134 at 162.356 kb on + strand, within Rv0134 at 162.356 kb on + strand, within Rv0134 at 162.645 kb on + strand at 162.645 kb on + strand at 162.645 kb on + strand at 162.646 kb on - strand at 162.646 kb on - strand at 162.646 kb on - strand at 162.792 kb on - strand, within Rv0135c at 162.846 kb on - strand, within Rv0135c at 162.846 kb on - strand, within Rv0135c at 162.954 kb on + strand, within Rv0135c at 162.955 kb on - strand, within Rv0135c at 162.955 kb on - strand, within Rv0135c at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.263 kb on - strand at 163.267 kb on - strand at 163.267 kb on - strand at 163.267 kb on - strand at 163.534 kb on + strand, within Rv0136 at 163.535 kb on - strand, within Rv0136 at 163.535 kb on - strand, within Rv0136 at 163.535 kb on - strand, within Rv0136 at 163.695 kb on - strand, within Rv0136 at 163.732 kb on + strand, within Rv0136 at 163.733 kb on - strand, within Rv0136 at 163.733 kb on - strand, within Rv0136 at 163.733 kb on - strand, within Rv0136 at 163.821 kb on + strand, within Rv0136 at 163.821 kb on + strand, within Rv0136 at 163.822 kb on - strand, within Rv0136 at 163.822 kb on - strand, within Rv0136 at 163.875 kb on - strand, within Rv0136 at 163.875 kb on - strand, within Rv0136 at 163.875 kb on - strand, within Rv0136 at 163.954 kb on + strand, within Rv0136 at 164.072 kb on + strand, within Rv0136
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dimethyl Sulfoxide 1 vol% remove 161,702 - +0.5 161,702 - -0.1 161,702 - -0.2 161,702 - +0.4 161,756 + +1.0 161,756 + +0.2 161,756 + -0.3 161,878 - Rv0134 0.12 -0.3 162,011 + Rv0134 0.27 -0.7 162,013 + Rv0134 0.27 -1.0 162,013 + Rv0134 0.27 -0.1 162,013 + Rv0134 0.27 -0.4 162,013 + Rv0134 0.27 -0.0 162,014 - Rv0134 0.27 +0.0 162,211 + Rv0134 0.49 +0.3 162,212 - Rv0134 0.49 +1.4 162,212 - Rv0134 0.49 -0.3 162,212 - Rv0134 0.49 -0.0 162,212 - Rv0134 0.49 -1.0 162,280 + Rv0134 0.56 -1.2 162,280 + Rv0134 0.56 -0.4 162,356 + Rv0134 0.65 -0.2 162,356 + Rv0134 0.65 +0.1 162,645 + -1.9 162,645 + +1.2 162,645 + -0.0 162,646 - -0.1 162,646 - -0.3 162,646 - -0.4 162,792 - Rv0135c 0.24 -1.4 162,846 - Rv0135c 0.33 -0.8 162,846 - Rv0135c 0.33 +0.4 162,954 + Rv0135c 0.51 -1.3 162,955 - Rv0135c 0.51 -0.2 162,955 - Rv0135c 0.51 -1.3 163,262 + -0.9 163,262 + +0.4 163,262 + -0.3 163,262 + -0.8 163,262 + -2.1 163,262 + +0.6 163,262 + +0.3 163,263 - -0.3 163,267 - +0.4 163,267 - +0.3 163,267 - -0.0 163,534 + Rv0136 0.13 +0.0 163,535 - Rv0136 0.13 -0.6 163,535 - Rv0136 0.13 -1.0 163,535 - Rv0136 0.13 +0.1 163,695 - Rv0136 0.25 -0.1 163,732 + Rv0136 0.28 +0.8 163,733 - Rv0136 0.28 +0.3 163,733 - Rv0136 0.28 -0.3 163,733 - Rv0136 0.28 -2.1 163,821 + Rv0136 0.34 -1.0 163,821 + Rv0136 0.34 +0.6 163,822 - Rv0136 0.34 -1.6 163,822 - Rv0136 0.34 +0.4 163,875 - Rv0136 0.38 +0.0 163,875 - Rv0136 0.38 -0.9 163,875 - Rv0136 0.38 -0.0 163,954 + Rv0136 0.44 +0.7 164,072 + Rv0136 0.53 -0.0
Or see this region's nucleotide sequence