Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3655c and Rv3656c are separated by 23 nucleotides Rv3656c and Rv3657c are separated by 9 nucleotides Rv3657c and Rv3658c are separated by 23 nucleotides Rv3658c and Rv3659c overlap by 4 nucleotides
Rv3655c: Rv3655c - Conserved hypothetical protein, at 4,094,923 to 4,095,300
Rv3655c
Rv3656c: Rv3656c - Conserved hypothetical protein, at 4,095,324 to 4,095,530
Rv3656c
Rv3657c: Rv3657c - Possible conserved alanine rich membrane protein, at 4,095,540 to 4,096,115
Rv3657c
Rv3658c: Rv3658c - Probable conserved transmembrane protein, at 4,096,139 to 4,096,939
Rv3658c
Rv3659c: Rv3659c - Conserved hypothetical protein, at 4,096,936 to 4,097,994
Rv3659c
Position (kb)
4096
4097 Strain fitness (log2 ratio)
-2
-1
0
1 at 4095.164 kb on - strand, within Rv3655c at 4095.164 kb on - strand, within Rv3655c at 4095.210 kb on + strand, within Rv3655c at 4095.211 kb on - strand, within Rv3655c at 4095.445 kb on + strand, within Rv3656c at 4095.531 kb on - strand at 4095.583 kb on - strand at 4095.777 kb on + strand, within Rv3657c at 4096.023 kb on + strand, within Rv3657c at 4096.310 kb on + strand, within Rv3658c at 4096.711 kb on - strand, within Rv3658c at 4096.930 kb on + strand at 4097.215 kb on + strand, within Rv3659c at 4097.216 kb on - strand, within Rv3659c at 4097.216 kb on - strand, within Rv3659c at 4097.216 kb on - strand, within Rv3659c at 4097.722 kb on + strand, within Rv3659c at 4097.722 kb on + strand, within Rv3659c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dimethyl Sulfoxide 1 vol% remove 4,095,164 - Rv3655c 0.64 -0.2 4,095,164 - Rv3655c 0.64 -1.2 4,095,210 + Rv3655c 0.76 -1.4 4,095,211 - Rv3655c 0.76 +0.0 4,095,445 + Rv3656c 0.58 +1.3 4,095,531 - -0.1 4,095,583 - -0.6 4,095,777 + Rv3657c 0.41 -0.7 4,096,023 + Rv3657c 0.84 -0.5 4,096,310 + Rv3658c 0.21 -1.9 4,096,711 - Rv3658c 0.71 -0.2 4,096,930 + -0.3 4,097,215 + Rv3659c 0.26 +0.4 4,097,216 - Rv3659c 0.26 +0.3 4,097,216 - Rv3659c 0.26 -0.7 4,097,216 - Rv3659c 0.26 +0.9 4,097,722 + Rv3659c 0.74 +0.1 4,097,722 + Rv3659c 0.74 +0.0
Or see this region's nucleotide sequence