Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2852c

Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dimethyl Sulfoxide 1 vol%
3,159,665	+		Rv2850c	0.79	-1.3
3,159,666	-		Rv2850c	0.79	+0.3
3,160,154	+		Rv2851c	0.22	-0.3
3,160,154	+		Rv2851c	0.22	-0.7
3,160,169	+		Rv2851c	0.25	+1.7
3,160,169	+		Rv2851c	0.25	-0.1
3,160,267	-		Rv2851c	0.46	-1.4
3,160,402	+		Rv2851c	0.75	+0.0
3,160,522	-				+1.2
3,160,562	+				-0.2
3,160,563	-				-0.6
3,160,593	-				+1.6
3,160,795	+		Rv2852c	0.15	-0.4
3,160,986	+		Rv2852c	0.27	-0.5
3,161,205	-		Rv2852c	0.42	-0.3
3,161,205	-		Rv2852c	0.42	-0.1
3,161,205	-		Rv2852c	0.42	-0.2
3,161,629	-		Rv2852c	0.71	+0.1
3,161,678	+		Rv2852c	0.74	-0.2
3,161,679	-		Rv2852c	0.74	+0.2
3,161,679	-		Rv2852c	0.74	-0.3
3,161,679	-		Rv2852c	0.74	-3.4
3,161,683	-		Rv2852c	0.74	-0.4
3,161,683	-		Rv2852c	0.74	+0.2
3,161,776	-		Rv2852c	0.81	-1.5
3,161,865	+		Rv2852c	0.87	-0.8
3,161,865	+		Rv2852c	0.87	-0.2
3,161,865	+		Rv2852c	0.87	-1.0
3,161,866	-		Rv2852c	0.87	-0.2
3,161,866	-		Rv2852c	0.87	+0.2
3,161,866	-		Rv2852c	0.87	-0.4
3,161,866	-		Rv2852c	0.87	-1.2
3,161,866	-		Rv2852c	0.87	-0.5
3,162,186	-				-0.1
3,162,221	+				-0.2
3,162,264	-				+0.2
3,162,264	-				-1.8
3,162,264	-				-0.3
3,162,274	+				-0.4
3,162,274	+				-0.2
3,162,274	+				-0.4
3,162,274	+				-0.4
3,162,274	+				-1.6
3,162,274	+				+0.3
3,162,275	-				+0.9
3,162,275	-				-0.4
3,162,275	-				-0.4
3,162,278	+				+0.3
3,162,278	+				+0.1
3,162,278	+				+1.0
3,162,278	+				+1.8
3,162,279	-				-0.5
3,162,312	+				-0.4
3,162,451	+				+0.5
3,162,452	-				+0.4
3,162,486	+		Rv2853	0.12	-0.9
3,162,487	-		Rv2853	0.12	-0.6
3,162,487	-		Rv2853	0.12	-1.0
3,162,526	+		Rv2853	0.14	-0.2
3,162,527	-		Rv2853	0.14	+0.1
3,162,573	-		Rv2853	0.17	-0.9
3,162,582	+		Rv2853	0.17	-0.3
3,162,583	-		Rv2853	0.17	+1.0
3,162,617	+		Rv2853	0.19	-0.4
3,162,618	-		Rv2853	0.19	-0.3
3,162,625	-		Rv2853	0.19	-0.5
3,162,680	-		Rv2853	0.22	-0.6
3,162,873	+		Rv2853	0.33	-0.8
3,162,874	-		Rv2853	0.33	-1.4
3,163,028	+		Rv2853	0.41	-0.3
3,163,050	+		Rv2853	0.42	-0.1
3,163,050	+		Rv2853	0.42	-0.3