Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0787 and Rv0787A are separated by 105 nucleotides Rv0787A and Rv0788 overlap by 4 nucleotides Rv0788 and Rv0789c are separated by 16 nucleotides Rv0789c and Rv0790c are separated by 21 nucleotides
Rv0787: Rv0787 - Unknown protein, at 881,459 to 882,418
Rv0787
Rv0787A: Rv0787A - Conserved protein, at 882,524 to 882,763
Rv0787A
Rv0788: Rv0788 - Probable phosphoribosylformylglycinamidine synthase I PURG (FGAM synthase I), at 882,760 to 883,434
Rv0788
Rv0789c: Rv0789c - Hypothetical protein, at 883,451 to 884,050
Rv0789c
Rv0790c: Rv0790c - Hypothetical protein, at 884,072 to 884,800
Rv0790c
Position (kb) 882
883
884 Strain fitness (log2 ratio) -2
-1
0
1 at 881.812 kb on + strand, within Rv0787 at 881.866 kb on + strand, within Rv0787 at 882.258 kb on - strand, within Rv0787 at 882.263 kb on + strand, within Rv0787 at 882.264 kb on - strand, within Rv0787 at 882.344 kb on - strand at 882.398 kb on + strand at 882.399 kb on - strand at 882.443 kb on - strand at 883.493 kb on + strand at 883.493 kb on + strand at 883.728 kb on + strand, within Rv0789c at 883.782 kb on - strand, within Rv0789c at 883.875 kb on + strand, within Rv0789c at 884.150 kb on + strand, within Rv0790c at 884.151 kb on - strand, within Rv0790c at 884.232 kb on + strand, within Rv0790c at 884.232 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.376 kb on + strand, within Rv0790c at 884.377 kb on - strand, within Rv0790c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dimethyl Sulfoxide 1 vol% remove 881,812 + Rv0787 0.37 +0.6 881,866 + Rv0787 0.42 -0.3 882,258 - Rv0787 0.83 +0.1 882,263 + Rv0787 0.84 +0.3 882,264 - Rv0787 0.84 +0.8 882,344 - +0.3 882,398 + +1.4 882,399 - +0.5 882,443 - -0.4 883,493 + -1.4 883,493 + -0.2 883,728 + Rv0789c 0.46 -0.0 883,782 - Rv0789c 0.55 +1.5 883,875 + Rv0789c 0.71 -0.9 884,150 + Rv0790c 0.11 -0.1 884,151 - Rv0790c 0.11 -0.5 884,232 + Rv0790c 0.22 +0.1 884,232 + Rv0790c 0.22 -0.2 884,376 + Rv0790c 0.42 +0.7 884,376 + Rv0790c 0.42 -0.5 884,376 + Rv0790c 0.42 -0.3 884,376 + Rv0790c 0.42 +0.5 884,376 + Rv0790c 0.42 -2.0 884,377 - Rv0790c 0.42 -0.3
Or see this region's nucleotide sequence