Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0642c and Rv0643c are separated by 64 nucleotides Rv0643c and Rv0644c are separated by 147 nucleotides
Rv0642c: Rv0642c - Methoxy mycolic acid synthase 4 MmaA4 (methyl mycolic acid synthase 4) (MMA4) (hydroxy mycolic acid synthase), at 736,298 to 737,203
Rv0642c
Rv0643c: Rv0643c - Methoxy mycolic acid synthase 3 MmaA3 (methyl mycolic acid synthase 3) (MMA3) (hydroxy mycolic acid synthase), at 737,268 to 738,149
Rv0643c
Rv0644c: Rv0644c - Methoxy mycolic acid synthase 2 MmaA2 (methyl mycolic acid synthase 2) (MMA2) (hydroxy mycolic acid synthase), at 738,297 to 739,160
Rv0644c
Position (kb) 737
738
739 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 736.278 kb on + strand at 736.363 kb on - strand at 736.384 kb on - strand at 736.384 kb on - strand at 736.401 kb on + strand, within Rv0642c at 736.482 kb on + strand, within Rv0642c at 736.580 kb on + strand, within Rv0642c at 737.029 kb on - strand, within Rv0642c at 737.226 kb on - strand at 737.302 kb on + strand at 737.302 kb on + strand at 737.339 kb on - strand at 737.339 kb on - strand at 737.348 kb on - strand at 737.356 kb on + strand at 737.356 kb on + strand at 737.358 kb on + strand, within Rv0643c at 737.586 kb on + strand, within Rv0643c at 737.586 kb on + strand, within Rv0643c at 737.610 kb on + strand, within Rv0643c at 737.610 kb on + strand, within Rv0643c at 737.611 kb on - strand, within Rv0643c at 737.730 kb on + strand, within Rv0643c at 737.876 kb on - strand, within Rv0643c at 737.876 kb on - strand, within Rv0643c at 737.967 kb on + strand, within Rv0643c at 737.967 kb on + strand, within Rv0643c at 737.968 kb on - strand, within Rv0643c at 738.023 kb on - strand, within Rv0643c at 738.034 kb on + strand, within Rv0643c at 738.034 kb on + strand, within Rv0643c at 738.034 kb on + strand, within Rv0643c at 738.034 kb on + strand, within Rv0643c at 738.085 kb on + strand at 738.202 kb on + strand at 738.203 kb on - strand at 738.274 kb on + strand at 738.275 kb on - strand at 738.298 kb on + strand at 738.376 kb on + strand at 738.385 kb on + strand, within Rv0644c at 738.467 kb on - strand, within Rv0644c at 738.904 kb on + strand, within Rv0644c at 738.904 kb on + strand, within Rv0644c at 738.904 kb on + strand, within Rv0644c at 738.904 kb on + strand, within Rv0644c at 738.904 kb on + strand, within Rv0644c at 738.905 kb on - strand, within Rv0644c at 738.905 kb on - strand, within Rv0644c at 738.981 kb on + strand, within Rv0644c at 738.981 kb on + strand, within Rv0644c at 738.981 kb on + strand, within Rv0644c at 738.981 kb on + strand, within Rv0644c at 738.981 kb on + strand, within Rv0644c at 738.981 kb on + strand, within Rv0644c at 738.981 kb on + strand, within Rv0644c at 738.982 kb on - strand, within Rv0644c at 738.982 kb on - strand, within Rv0644c at 739.063 kb on + strand, within Rv0644c at 739.064 kb on - strand, within Rv0644c at 739.114 kb on + strand at 739.114 kb on + strand at 739.147 kb on - strand at 739.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dimethyl Sulfoxide 1 vol% remove 736,278 + +0.6 736,363 - +4.9 736,384 - +0.2 736,384 - +0.8 736,401 + Rv0642c 0.11 +0.9 736,482 + Rv0642c 0.20 +3.0 736,580 + Rv0642c 0.31 +5.5 737,029 - Rv0642c 0.81 +1.4 737,226 - +1.1 737,302 + -1.6 737,302 + -0.2 737,339 - +1.1 737,339 - +0.5 737,348 - -0.1 737,356 + +0.4 737,356 + -0.4 737,358 + Rv0643c 0.10 +0.9 737,586 + Rv0643c 0.36 -0.5 737,586 + Rv0643c 0.36 +0.3 737,610 + Rv0643c 0.39 +0.6 737,610 + Rv0643c 0.39 +0.6 737,611 - Rv0643c 0.39 +0.7 737,730 + Rv0643c 0.52 +0.5 737,876 - Rv0643c 0.69 +1.3 737,876 - Rv0643c 0.69 -0.5 737,967 + Rv0643c 0.79 +1.6 737,967 + Rv0643c 0.79 +0.4 737,968 - Rv0643c 0.79 -2.0 738,023 - Rv0643c 0.86 -0.8 738,034 + Rv0643c 0.87 -0.0 738,034 + Rv0643c 0.87 +0.7 738,034 + Rv0643c 0.87 +0.5 738,034 + Rv0643c 0.87 +0.1 738,085 + +0.2 738,202 + -0.7 738,203 - +0.7 738,274 + +0.1 738,275 - +0.4 738,298 + +0.0 738,376 + +0.1 738,385 + Rv0644c 0.10 -1.1 738,467 - Rv0644c 0.20 -0.2 738,904 + Rv0644c 0.70 -0.5 738,904 + Rv0644c 0.70 +0.0 738,904 + Rv0644c 0.70 -0.7 738,904 + Rv0644c 0.70 +1.5 738,904 + Rv0644c 0.70 +0.3 738,905 - Rv0644c 0.70 -0.8 738,905 - Rv0644c 0.70 +1.0 738,981 + Rv0644c 0.79 +0.4 738,981 + Rv0644c 0.79 +2.9 738,981 + Rv0644c 0.79 -1.7 738,981 + Rv0644c 0.79 -0.3 738,981 + Rv0644c 0.79 +0.4 738,981 + Rv0644c 0.79 -0.4 738,981 + Rv0644c 0.79 -1.5 738,982 - Rv0644c 0.79 +0.5 738,982 - Rv0644c 0.79 +0.0 739,063 + Rv0644c 0.89 +0.3 739,064 - Rv0644c 0.89 -0.4 739,114 + +0.3 739,114 + +0.9 739,147 - -0.9 739,147 - -0.0
Or see this region's nucleotide sequence