Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0450c and Rv0451c overlap by 4 nucleotides Rv0451c and Rv0452 are separated by 231 nucleotides
Rv0450c: Rv0450c - Probable conserved transmembrane transport protein MmpL4, at 538,588 to 541,491
Rv0450c
Rv0451c: Rv0451c - Probable conserved membrane protein MmpS4, at 541,488 to 541,910
Rv0451c
Rv0452: Rv0452 - Possible transcriptional regulatory protein, at 542,142 to 542,852
Rv0452
Position (kb) 541
542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 540.513 kb on - strand, within Rv0450c at 540.597 kb on - strand, within Rv0450c at 540.605 kb on + strand, within Rv0450c at 540.605 kb on + strand, within Rv0450c at 540.606 kb on - strand, within Rv0450c at 540.609 kb on - strand, within Rv0450c at 540.674 kb on + strand, within Rv0450c at 540.675 kb on - strand, within Rv0450c at 540.748 kb on - strand, within Rv0450c at 540.900 kb on + strand, within Rv0450c at 541.510 kb on + strand at 541.644 kb on - strand, within Rv0451c at 541.801 kb on + strand, within Rv0451c at 541.905 kb on + strand at 541.906 kb on - strand at 541.906 kb on - strand at 541.906 kb on - strand at 541.995 kb on + strand at 541.995 kb on + strand at 542.009 kb on + strand at 542.038 kb on - strand at 542.038 kb on - strand at 542.059 kb on + strand at 542.059 kb on + strand at 542.060 kb on - strand at 542.079 kb on - strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.108 kb on - strand at 542.399 kb on - strand, within Rv0452 at 542.582 kb on - strand, within Rv0452 at 542.658 kb on + strand, within Rv0452 at 542.719 kb on - strand, within Rv0452
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dimethyl Sulfoxide 1 vol% remove 540,513 - Rv0450c 0.66 +2.1 540,597 - Rv0450c 0.69 +1.5 540,605 + Rv0450c 0.69 +0.7 540,605 + Rv0450c 0.69 +0.3 540,606 - Rv0450c 0.69 +0.8 540,609 - Rv0450c 0.70 +0.8 540,674 + Rv0450c 0.72 +0.7 540,675 - Rv0450c 0.72 +0.7 540,748 - Rv0450c 0.74 +2.3 540,900 + Rv0450c 0.80 +1.2 541,510 + +0.9 541,644 - Rv0451c 0.37 +1.0 541,801 + Rv0451c 0.74 +1.3 541,905 + +2.3 541,906 - +1.0 541,906 - -0.4 541,906 - -1.5 541,995 + +1.7 541,995 + +1.0 542,009 + +0.3 542,038 - -1.0 542,038 - +2.3 542,059 + +0.2 542,059 + +1.1 542,060 - +0.5 542,079 - -2.0 542,107 + +0.9 542,107 + +1.1 542,107 + +1.1 542,107 + +1.9 542,107 + +1.0 542,107 + +1.1 542,107 + +0.2 542,108 - +1.7 542,399 - Rv0452 0.36 -2.3 542,582 - Rv0452 0.62 -1.0 542,658 + Rv0452 0.73 -1.9 542,719 - Rv0452 0.81 +0.6
Or see this region's nucleotide sequence