Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0352 and Rv0353 overlap by 1 nucleotides Rv0353 and Rv0354c are separated by 249 nucleotides Rv0354c and Rv0355c are separated by 82 nucleotides
Rv0352: Rv0352 - Probable chaperone protein DnaJ1, at 422,452 to 423,639
Rv0352
Rv0353: Rv0353 - Probable heat shock protein transcriptional repressor HspR (MerR family), at 423,639 to 424,019
Rv0353
Rv0354c: Rv0354c - PPE family protein PPE7, at 424,269 to 424,694
Rv0354c
Rv0355c: Rv0355c - PPE family protein PPE8, at 424,777 to 434,679
Rv0355c
Position (kb) 424
425 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 423.631 kb on - strand at 423.728 kb on + strand, within Rv0353 at 423.728 kb on + strand, within Rv0353 at 423.728 kb on + strand, within Rv0353 at 423.732 kb on + strand, within Rv0353 at 423.732 kb on + strand, within Rv0353 at 423.733 kb on - strand, within Rv0353 at 423.733 kb on - strand, within Rv0353 at 424.031 kb on + strand at 424.263 kb on + strand at 424.263 kb on + strand at 424.264 kb on - strand at 424.264 kb on - strand at 424.270 kb on + strand at 424.271 kb on - strand at 424.604 kb on - strand, within Rv0354c at 424.632 kb on + strand, within Rv0354c at 424.632 kb on + strand, within Rv0354c at 424.632 kb on + strand, within Rv0354c at 424.633 kb on - strand, within Rv0354c at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.675 kb on + strand at 424.675 kb on + strand at 424.675 kb on + strand at 424.675 kb on + strand at 424.676 kb on - strand at 424.676 kb on - strand at 424.676 kb on - strand at 424.676 kb on - strand at 424.676 kb on - strand at 424.676 kb on - strand at 424.676 kb on - strand at 424.728 kb on - strand at 424.773 kb on + strand at 424.797 kb on - strand at 424.797 kb on - strand at 424.844 kb on - strand at 424.844 kb on - strand at 424.973 kb on + strand at 424.974 kb on - strand at 424.974 kb on - strand at 424.974 kb on - strand at 424.974 kb on - strand at 425.004 kb on - strand at 425.050 kb on + strand at 425.050 kb on + strand at 425.051 kb on - strand at 425.063 kb on + strand at 425.064 kb on - strand at 425.154 kb on - strand at 425.154 kb on - strand at 425.230 kb on + strand at 425.231 kb on - strand at 425.538 kb on - strand at 425.538 kb on - strand at 425.538 kb on - strand at 425.567 kb on + strand at 425.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Dimethyl Sulfoxide 1 vol% remove 423,631 - +1.6 423,728 + Rv0353 0.23 -0.7 423,728 + Rv0353 0.23 +0.9 423,728 + Rv0353 0.23 -0.2 423,732 + Rv0353 0.24 +2.9 423,732 + Rv0353 0.24 +2.3 423,733 - Rv0353 0.25 +0.7 423,733 - Rv0353 0.25 -0.5 424,031 + -1.0 424,263 + +2.3 424,263 + -0.3 424,264 - -0.9 424,264 - +0.6 424,270 + +0.5 424,271 - -0.4 424,604 - Rv0354c 0.79 -0.5 424,632 + Rv0354c 0.85 -1.2 424,632 + Rv0354c 0.85 -0.3 424,632 + Rv0354c 0.85 +1.1 424,633 - Rv0354c 0.85 +2.9 424,653 + +0.1 424,653 + +0.0 424,653 + -0.1 424,653 + -0.5 424,653 + -1.0 424,653 + -0.1 424,653 + +0.5 424,654 - +0.1 424,654 - +0.4 424,654 - -0.4 424,654 - +0.3 424,654 - -0.3 424,654 - +0.4 424,675 + -0.7 424,675 + -0.1 424,675 + +0.1 424,675 + -0.3 424,676 - -0.7 424,676 - -0.3 424,676 - -0.2 424,676 - -0.1 424,676 - -1.0 424,676 - -0.5 424,676 - -0.2 424,728 - -0.3 424,773 + -0.6 424,797 - -0.2 424,797 - -0.5 424,844 - +0.7 424,844 - +1.1 424,973 + +0.0 424,974 - +1.1 424,974 - +0.0 424,974 - -0.5 424,974 - -0.6 425,004 - -0.9 425,050 + -0.5 425,050 + +0.1 425,051 - -0.1 425,063 + -1.3 425,064 - -1.7 425,154 - -0.8 425,154 - +0.3 425,230 + -2.6 425,231 - -0.3 425,538 - -1.0 425,538 - -0.0 425,538 - -0.7 425,567 + +0.2 425,628 - -1.8
Or see this region's nucleotide sequence