Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3712 and Rv3713 are separated by 4 nucleotides Rv3713 and Rv3714c are separated by 8 nucleotides Rv3714c and Rv3715c are separated by 67 nucleotides Rv3715c and Rv3716c are separated by 11 nucleotides
Rv3712: Rv3712 - Possible ligase, at 4,156,981 to 4,158,222
Rv3712
Rv3713: Rv3713 - Possible cobyric acid synthase CobQ2, at 4,158,227 to 4,158,922
Rv3713
Rv3714c: Rv3714c - Conserved hypothetical protein, at 4,158,931 to 4,159,821
Rv3714c
Rv3715c: Rv3715c - Probable recombination protein RecR, at 4,159,889 to 4,160,500
Rv3715c
Rv3716c: Rv3716c - Conserved protein, at 4,160,512 to 4,160,913
Rv3716c
Position (kb) 4158
4159
4160 Strain fitness (log2 ratio) -1
0
1 at 4158.920 kb on + strand at 4159.121 kb on + strand, within Rv3714c at 4159.122 kb on - strand, within Rv3714c at 4159.122 kb on - strand, within Rv3714c at 4159.122 kb on - strand, within Rv3714c at 4159.122 kb on - strand, within Rv3714c at 4159.324 kb on + strand, within Rv3714c at 4159.324 kb on + strand, within Rv3714c at 4159.325 kb on - strand, within Rv3714c at 4159.418 kb on + strand, within Rv3714c at 4159.496 kb on - strand, within Rv3714c at 4159.594 kb on - strand, within Rv3714c at 4159.600 kb on + strand, within Rv3714c at 4159.601 kb on - strand, within Rv3714c at 4159.679 kb on + strand, within Rv3714c at 4159.679 kb on + strand, within Rv3714c at 4159.680 kb on - strand, within Rv3714c at 4159.680 kb on - strand, within Rv3714c at 4159.680 kb on - strand, within Rv3714c at 4159.680 kb on - strand, within Rv3714c at 4160.029 kb on - strand, within Rv3715c at 4160.193 kb on + strand, within Rv3715c at 4160.399 kb on + strand, within Rv3715c at 4160.572 kb on - strand, within Rv3716c
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 4,158,920 + -0.4 4,159,121 + Rv3714c 0.21 -1.0 4,159,122 - Rv3714c 0.21 -0.3 4,159,122 - Rv3714c 0.21 -0.4 4,159,122 - Rv3714c 0.21 +0.5 4,159,122 - Rv3714c 0.21 -0.8 4,159,324 + Rv3714c 0.44 -0.5 4,159,324 + Rv3714c 0.44 -0.9 4,159,325 - Rv3714c 0.44 -0.2 4,159,418 + Rv3714c 0.55 +0.3 4,159,496 - Rv3714c 0.63 -0.8 4,159,594 - Rv3714c 0.74 -0.2 4,159,600 + Rv3714c 0.75 -0.7 4,159,601 - Rv3714c 0.75 -0.9 4,159,679 + Rv3714c 0.84 +0.1 4,159,679 + Rv3714c 0.84 -0.2 4,159,680 - Rv3714c 0.84 -1.6 4,159,680 - Rv3714c 0.84 -0.5 4,159,680 - Rv3714c 0.84 -0.3 4,159,680 - Rv3714c 0.84 +0.8 4,160,029 - Rv3715c 0.23 -0.5 4,160,193 + Rv3715c 0.50 -0.1 4,160,399 + Rv3715c 0.83 +0.1 4,160,572 - Rv3716c 0.15 +0.5
Or see this region's nucleotide sequence