Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0933

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRv0932c and Rv0933 are separated by 215 nucleotidesRv0933 and Rv0934 are separated by 20 nucleotides Rv0932c: Rv0932c - Periplasmic phosphate-binding lipoprotein PstS2 (PBP-2) (PstS2), at 1,039,936 to 1,041,048 Rv0932c Rv0933: Rv0933 - Phosphate-transport ATP-binding protein ABC transporter PstB, at 1,041,264 to 1,042,094 Rv0933 Rv0934: Rv0934 - Periplasmic phosphate-binding lipoprotein PstS1 (PBP-1) (PstS1), at 1,042,115 to 1,043,239 Rv0934 Position (kb) 1041 1042 1043Strain fitness (log2 ratio) -2 -1 0 1 2at 1040.318 kb on + strand, within Rv0932cat 1040.318 kb on + strand, within Rv0932cat 1040.319 kb on - strand, within Rv0932cat 1040.319 kb on - strand, within Rv0932cat 1040.319 kb on - strand, within Rv0932cat 1040.451 kb on - strand, within Rv0932cat 1040.497 kb on - strand, within Rv0932cat 1040.502 kb on + strand, within Rv0932cat 1040.634 kb on + strand, within Rv0932cat 1040.634 kb on + strand, within Rv0932cat 1040.635 kb on - strand, within Rv0932cat 1040.639 kb on + strand, within Rv0932cat 1040.639 kb on + strand, within Rv0932cat 1040.640 kb on - strand, within Rv0932cat 1040.640 kb on - strand, within Rv0932cat 1040.852 kb on + strand, within Rv0932cat 1040.852 kb on + strand, within Rv0932cat 1041.249 kb on + strandat 1041.249 kb on + strandat 1041.249 kb on + strandat 1041.249 kb on + strandat 1041.249 kb on + strandat 1041.249 kb on + strandat 1041.250 kb on - strandat 1041.253 kb on - strandat 1041.253 kb on - strandat 1041.253 kb on - strandat 1041.386 kb on + strand, within Rv0933at 1041.855 kb on - strand, within Rv0933at 1041.924 kb on - strand, within Rv0933at 1042.109 kb on + strandat 1042.132 kb on + strandat 1042.170 kb on + strandat 1042.299 kb on - strand, within Rv0934at 1042.436 kb on + strand, within Rv0934at 1042.436 kb on + strand, within Rv0934at 1042.453 kb on + strand, within Rv0934at 1042.454 kb on - strand, within Rv0934at 1042.514 kb on + strand, within Rv0934at 1042.514 kb on + strand, within Rv0934at 1042.515 kb on - strand, within Rv0934at 1042.575 kb on - strand, within Rv0934at 1042.706 kb on + strand, within Rv0934at 1042.707 kb on - strand, within Rv0934at 1042.911 kb on + strand, within Rv0934at 1042.918 kb on + strand, within Rv0934at 1042.919 kb on - strand, within Rv0934at 1043.054 kb on + strand, within Rv0934at 1043.055 kb on - strand, within Rv0934

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
1,040,318 + Rv0932c 0.34 +0.8
1,040,318 + Rv0932c 0.34 +0.2
1,040,319 - Rv0932c 0.34 -0.3
1,040,319 - Rv0932c 0.34 -0.1
1,040,319 - Rv0932c 0.34 -1.3
1,040,451 - Rv0932c 0.46 -0.6
1,040,497 - Rv0932c 0.50 -0.2
1,040,502 + Rv0932c 0.51 -1.0
1,040,634 + Rv0932c 0.63 -0.8
1,040,634 + Rv0932c 0.63 +0.0
1,040,635 - Rv0932c 0.63 -0.4
1,040,639 + Rv0932c 0.63 -0.4
1,040,639 + Rv0932c 0.63 -1.3
1,040,640 - Rv0932c 0.63 -0.9
1,040,640 - Rv0932c 0.63 -0.3
1,040,852 + Rv0932c 0.82 -1.3
1,040,852 + Rv0932c 0.82 -0.9
1,041,249 + +0.4
1,041,249 + +0.3
1,041,249 + -0.1
1,041,249 + +0.1
1,041,249 + -0.5
1,041,249 + -0.3
1,041,250 - +0.4
1,041,253 - -0.3
1,041,253 - +0.3
1,041,253 - +0.7
1,041,386 + Rv0933 0.15 -0.1
1,041,855 - Rv0933 0.71 +2.6
1,041,924 - Rv0933 0.79 +0.2
1,042,109 + -1.1
1,042,132 + +0.7
1,042,170 + +1.7
1,042,299 - Rv0934 0.16 -1.1
1,042,436 + Rv0934 0.29 +0.4
1,042,436 + Rv0934 0.29 -0.5
1,042,453 + Rv0934 0.30 +0.5
1,042,454 - Rv0934 0.30 +0.5
1,042,514 + Rv0934 0.35 +1.2
1,042,514 + Rv0934 0.35 -0.5
1,042,515 - Rv0934 0.36 -0.4
1,042,575 - Rv0934 0.41 -0.1
1,042,706 + Rv0934 0.53 -2.2
1,042,707 - Rv0934 0.53 -0.5
1,042,911 + Rv0934 0.71 +1.0
1,042,918 + Rv0934 0.71 +0.9
1,042,919 - Rv0934 0.71 +0.3
1,043,054 + Rv0934 0.83 +0.4
1,043,055 - Rv0934 0.84 -0.0

Or see this region's nucleotide sequence