Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0785 and Rv0786c are separated by 34 nucleotides Rv0786c and Rv0787 overlap by 6 nucleotides Rv0787 and Rv0787A are separated by 105 nucleotides Rv0787A and Rv0788 overlap by 4 nucleotides
Rv0785: Rv0785 - Conserved protein, at 879,340 to 881,040
Rv0785
Rv0786c: Rv0786c - Conserved protein, at 881,075 to 881,464
Rv0786c
Rv0787: Rv0787 - Unknown protein, at 881,459 to 882,418
Rv0787
Rv0787A: Rv0787A - Conserved protein, at 882,524 to 882,763
Rv0787A
Rv0788: Rv0788 - Probable phosphoribosylformylglycinamidine synthase I PURG (FGAM synthase I), at 882,760 to 883,434
Rv0788
Position (kb) 881
882
883 Strain fitness (log2 ratio) -1
0
1 at 880.683 kb on + strand, within Rv0785 at 880.684 kb on - strand, within Rv0785 at 880.732 kb on + strand, within Rv0785 at 881.064 kb on + strand at 881.065 kb on - strand at 881.145 kb on + strand, within Rv0786c at 881.148 kb on + strand, within Rv0786c at 881.358 kb on + strand, within Rv0786c at 881.638 kb on + strand, within Rv0787 at 881.812 kb on + strand, within Rv0787 at 881.866 kb on + strand, within Rv0787 at 882.257 kb on + strand, within Rv0787 at 882.258 kb on - strand, within Rv0787 at 882.263 kb on + strand, within Rv0787 at 882.264 kb on - strand, within Rv0787 at 882.344 kb on - strand at 882.398 kb on + strand at 882.399 kb on - strand at 882.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 880,683 + Rv0785 0.79 -0.1 880,684 - Rv0785 0.79 -0.7 880,732 + Rv0785 0.82 -0.6 881,064 + -0.1 881,065 - +0.7 881,145 + Rv0786c 0.18 +0.4 881,148 + Rv0786c 0.19 -0.5 881,358 + Rv0786c 0.73 -0.8 881,638 + Rv0787 0.19 -0.2 881,812 + Rv0787 0.37 +0.5 881,866 + Rv0787 0.42 +0.4 882,257 + Rv0787 0.83 +1.1 882,258 - Rv0787 0.83 +0.1 882,263 + Rv0787 0.84 -0.1 882,264 - Rv0787 0.84 +0.1 882,344 - +1.0 882,398 + +0.8 882,399 - -0.0 882,443 - -0.7
Or see this region's nucleotide sequence