Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0111 and Rv0112 are separated by 281 nucleotides Rv0112 and Rv0113 are separated by 73 nucleotides Rv0113 and Rv0114 are separated by 31 nucleotides
Rv0111: Rv0111 - Possible transmembrane acyltransferase, at 133,950 to 136,007
Rv0111
Rv0112: Rv0112 - Possible GDP-mannose 4,6-dehydratase Gca (GDP-D-mannose dehydratase), at 136,289 to 137,245
Rv0112
Rv0113: Rv0113 - Probable sedoheptulose-7-phosphate isomerase GmhA (phosphoheptose isomerase), at 137,319 to 137,909
Rv0113
Rv0114: Rv0114 - Possible D-alpha,beta-D-heptose-1,7-biphosphate phosphatase GmhB (D-glycero-D-manno-heptose 7-phosphate kinase), at 137,941 to 138,513
Rv0114
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 135.402 kb on + strand, within Rv0111 at 135.483 kb on + strand, within Rv0111 at 135.484 kb on - strand, within Rv0111 at 135.660 kb on + strand, within Rv0111 at 135.661 kb on - strand, within Rv0111 at 135.677 kb on - strand, within Rv0111 at 135.775 kb on - strand, within Rv0111 at 135.894 kb on + strand at 136.089 kb on + strand at 136.090 kb on - strand at 136.101 kb on - strand at 136.159 kb on + strand at 136.163 kb on + strand at 136.164 kb on - strand at 136.164 kb on - strand at 136.375 kb on + strand at 136.376 kb on - strand at 136.622 kb on - strand, within Rv0112 at 136.678 kb on + strand, within Rv0112 at 136.921 kb on + strand, within Rv0112 at 137.043 kb on + strand, within Rv0112 at 137.044 kb on - strand, within Rv0112 at 137.123 kb on + strand, within Rv0112 at 137.151 kb on + strand at 137.588 kb on - strand, within Rv0113 at 137.607 kb on + strand, within Rv0113 at 138.023 kb on - strand, within Rv0114 at 138.100 kb on + strand, within Rv0114 at 138.100 kb on + strand, within Rv0114 at 138.101 kb on - strand, within Rv0114 at 138.170 kb on + strand, within Rv0114 at 138.170 kb on + strand, within Rv0114 at 138.170 kb on + strand, within Rv0114 at 138.215 kb on + strand, within Rv0114 at 138.215 kb on + strand, within Rv0114 at 138.215 kb on + strand, within Rv0114 at 138.216 kb on - strand, within Rv0114
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 135,402 + Rv0111 0.71 +0.9 135,483 + Rv0111 0.74 -0.5 135,484 - Rv0111 0.75 -0.4 135,660 + Rv0111 0.83 -0.9 135,661 - Rv0111 0.83 +1.8 135,677 - Rv0111 0.84 -0.4 135,775 - Rv0111 0.89 -2.0 135,894 + -0.6 136,089 + -0.4 136,090 - -0.8 136,101 - -2.7 136,159 + +0.2 136,163 + +0.1 136,164 - -0.2 136,164 - +3.4 136,375 + -0.1 136,376 - +0.2 136,622 - Rv0112 0.35 +1.0 136,678 + Rv0112 0.41 +0.2 136,921 + Rv0112 0.66 +1.4 137,043 + Rv0112 0.79 +0.3 137,044 - Rv0112 0.79 -0.1 137,123 + Rv0112 0.87 -1.4 137,151 + -0.2 137,588 - Rv0113 0.46 -1.2 137,607 + Rv0113 0.49 -0.2 138,023 - Rv0114 0.14 -0.9 138,100 + Rv0114 0.28 +0.6 138,100 + Rv0114 0.28 -0.4 138,101 - Rv0114 0.28 -0.2 138,170 + Rv0114 0.40 -0.5 138,170 + Rv0114 0.40 -0.3 138,170 + Rv0114 0.40 +0.1 138,215 + Rv0114 0.48 -0.1 138,215 + Rv0114 0.48 -0.4 138,215 + Rv0114 0.48 +0.5 138,216 - Rv0114 0.48 -1.0
Or see this region's nucleotide sequence