Experiment: no (N) 1 week recovered
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS00265 and SGL_RS00270 overlap by 33 nucleotides SGL_RS00270 and SGL_RS00275 are separated by 2 nucleotides
SGL_RS00265: SGL_RS00265 - NACHT domain-containing NTPase, at 57,972 to 60,323
_RS00265
SGL_RS00270: SGL_RS00270 - response regulator, at 60,291 to 61,199
_RS00270
SGL_RS00275: SGL_RS00275 - response regulator, at 61,202 to 64,831
_RS00275
Position (kb) 60
61
62 Strain fitness (log2 ratio) -1
0
1 at 59.921 kb on - strand, within SGL_RS00265 at 60.047 kb on + strand, within SGL_RS00265 at 60.081 kb on + strand, within SGL_RS00265 at 60.099 kb on + strand at 60.116 kb on + strand at 60.238 kb on + strand at 60.246 kb on - strand at 60.303 kb on - strand at 60.303 kb on - strand at 60.303 kb on - strand at 60.303 kb on - strand at 60.326 kb on + strand at 60.339 kb on - strand at 60.349 kb on - strand at 60.398 kb on + strand, within SGL_RS00270 at 60.456 kb on - strand, within SGL_RS00270 at 60.592 kb on + strand, within SGL_RS00270 at 60.611 kb on + strand, within SGL_RS00270 at 60.747 kb on - strand, within SGL_RS00270 at 61.377 kb on - strand at 61.385 kb on - strand at 61.400 kb on + strand at 61.843 kb on + strand, within SGL_RS00275 at 61.907 kb on - strand, within SGL_RS00275 at 61.978 kb on - strand, within SGL_RS00275 at 61.984 kb on + strand, within SGL_RS00275 at 62.027 kb on - strand, within SGL_RS00275 at 62.142 kb on + strand, within SGL_RS00275 at 62.142 kb on + strand, within SGL_RS00275 at 62.167 kb on + strand, within SGL_RS00275 at 62.174 kb on - strand, within SGL_RS00275
Per-strain Table
Position Strand Gene LocusTag Fraction no (N) 1 week recovered remove 59,921 - SGL_RS00265 0.83 +0.8 60,047 + SGL_RS00265 0.88 +1.2 60,081 + SGL_RS00265 0.90 +0.3 60,099 + +0.6 60,116 + +0.7 60,238 + +0.6 60,246 - +0.6 60,303 - +0.4 60,303 - -0.1 60,303 - +0.2 60,303 - +0.4 60,326 + -0.1 60,339 - +0.3 60,349 - +0.4 60,398 + SGL_RS00270 0.12 +1.0 60,456 - SGL_RS00270 0.18 +0.3 60,592 + SGL_RS00270 0.33 +0.6 60,611 + SGL_RS00270 0.35 +0.9 60,747 - SGL_RS00270 0.50 +0.3 61,377 - +0.9 61,385 - -0.2 61,400 + -0.0 61,843 + SGL_RS00275 0.18 -0.0 61,907 - SGL_RS00275 0.19 +0.1 61,978 - SGL_RS00275 0.21 +0.0 61,984 + SGL_RS00275 0.22 -0.2 62,027 - SGL_RS00275 0.23 -1.3 62,142 + SGL_RS00275 0.26 -0.1 62,142 + SGL_RS00275 0.26 +0.1 62,167 + SGL_RS00275 0.27 -0.9 62,174 - SGL_RS00275 0.27 +0.3
Or see this region's nucleotide sequence