Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02615 and SGL_RS19540 are separated by 74 nucleotides SGL_RS19540 and SGL_RS18655 are separated by 42 nucleotides SGL_RS18655 and SGL_RS02620 are separated by 164 nucleotides SGL_RS02620 and SGL_RS02625 are separated by 29 nucleotides
SGL_RS02615: SGL_RS02615 - metallophosphoesterase, at 158,757 to 159,737
_RS02615
SGL_RS19540: SGL_RS19540 - hypothetical protein, at 159,812 to 159,961
_RS19540
SGL_RS18655: SGL_RS18655 - cytochrome b6-f complex subunit PetN, at 160,004 to 160,093
_RS18655
SGL_RS02620: SGL_RS02620 - RDD family protein, at 160,258 to 161,058
_RS02620
SGL_RS02625: SGL_RS02625 - peroxiredoxin, at 161,088 to 161,642
_RS02625
Position (kb) 160
161 Strain fitness (log2 ratio) -1
0
1
2 at 159.048 kb on + strand, within SGL_RS02615 at 159.059 kb on + strand, within SGL_RS02615 at 159.082 kb on + strand, within SGL_RS02615 at 159.110 kb on - strand, within SGL_RS02615 at 159.273 kb on - strand, within SGL_RS02615 at 159.386 kb on + strand, within SGL_RS02615 at 159.526 kb on - strand, within SGL_RS02615 at 159.625 kb on + strand, within SGL_RS02615 at 159.643 kb on - strand at 160.416 kb on - strand, within SGL_RS02620 at 160.534 kb on + strand, within SGL_RS02620 at 160.829 kb on + strand, within SGL_RS02620 at 160.842 kb on + strand, within SGL_RS02620 at 160.850 kb on - strand, within SGL_RS02620 at 160.898 kb on - strand, within SGL_RS02620 at 160.899 kb on - strand, within SGL_RS02620
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 159,048 + SGL_RS02615 0.30 -0.7 159,059 + SGL_RS02615 0.31 +1.3 159,082 + SGL_RS02615 0.33 +0.1 159,110 - SGL_RS02615 0.36 -1.0 159,273 - SGL_RS02615 0.53 +0.3 159,386 + SGL_RS02615 0.64 -0.2 159,526 - SGL_RS02615 0.78 -0.4 159,625 + SGL_RS02615 0.88 -0.9 159,643 - -0.5 160,416 - SGL_RS02620 0.20 +0.3 160,534 + SGL_RS02620 0.34 +1.9 160,829 + SGL_RS02620 0.71 +0.2 160,842 + SGL_RS02620 0.73 +0.1 160,850 - SGL_RS02620 0.74 +1.1 160,898 - SGL_RS02620 0.80 +0.6 160,899 - SGL_RS02620 0.80 +0.5
Or see this region's nucleotide sequence