Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18650

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02540 and SGL_RS18650 are separated by 108 nucleotidesSGL_RS18650 and SGL_RS02545 are separated by 148 nucleotides SGL_RS02540: SGL_RS02540 - universal stress protein, at 145,761 to 146,615 _RS02540 SGL_RS18650: SGL_RS18650 - photosystem II reaction center protein PsbM, at 146,724 to 146,831 _RS18650 SGL_RS02545: SGL_RS02545 - histone deacetylase, at 146,980 to 147,894 _RS02545 Position (kb) 146 147Strain fitness (log2 ratio) -1 0 1at 145.805 kb on - strandat 145.814 kb on + strandat 146.011 kb on - strand, within SGL_RS02540at 146.453 kb on + strand, within SGL_RS02540at 146.461 kb on - strand, within SGL_RS02540at 146.508 kb on + strand, within SGL_RS02540at 146.553 kb on - strandat 146.691 kb on + strandat 146.812 kb on - strand, within SGL_RS18650at 146.840 kb on - strandat 146.880 kb on - strandat 146.963 kb on + strandat 147.028 kb on - strandat 147.036 kb on + strandat 147.052 kb on - strandat 147.284 kb on + strand, within SGL_RS02545at 147.301 kb on - strand, within SGL_RS02545at 147.325 kb on + strand, within SGL_RS02545at 147.339 kb on - strand, within SGL_RS02545at 147.466 kb on + strand, within SGL_RS02545at 147.728 kb on + strand, within SGL_RS02545

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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145,805 - +1.1
145,814 + +0.7
146,011 - SGL_RS02540 0.29 +1.4
146,453 + SGL_RS02540 0.81 +0.7
146,461 - SGL_RS02540 0.82 +1.3
146,508 + SGL_RS02540 0.87 -0.1
146,553 - +1.3
146,691 + -1.0
146,812 - SGL_RS18650 0.81 -1.3
146,840 - -1.7
146,880 - -0.8
146,963 + +0.0
147,028 - +0.6
147,036 + +0.8
147,052 - +0.3
147,284 + SGL_RS02545 0.33 -0.5
147,301 - SGL_RS02545 0.35 +0.5
147,325 + SGL_RS02545 0.38 -0.6
147,339 - SGL_RS02545 0.39 +0.1
147,466 + SGL_RS02545 0.53 +0.0
147,728 + SGL_RS02545 0.82 +0.2

Or see this region's nucleotide sequence