Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18140 and SGL_RS18145 are separated by 30 nucleotides SGL_RS18145 and SGL_RS18150 are separated by 188 nucleotides SGL_RS18150 and SGL_RS18155 are separated by 70 nucleotides SGL_RS18155 and SGL_RS18160 are separated by 60 nucleotides SGL_RS18160 and SGL_RS18165 are separated by 176 nucleotides
SGL_RS18140: SGL_RS18140 - class I SAM-dependent methyltransferase, at 3,525,482 to 3,526,066
_RS18140
SGL_RS18145: SGL_RS18145 - rhodanese-like domain-containing protein, at 3,526,097 to 3,526,591
_RS18145
SGL_RS18150: SGL_RS18150 - DUF2892 domain-containing protein, at 3,526,780 to 3,526,974
_RS18150
SGL_RS18155: SGL_RS18155 - cytochrome b6-f complex iron-sulfur subunit, at 3,527,045 to 3,527,581
_RS18155
SGL_RS18160: SGL_RS18160 - DUF2214 family protein, at 3,527,642 to 3,528,088
_RS18160
SGL_RS18165: SGL_RS18165 - hypothetical protein, at 3,528,265 to 3,529,305
_RS18165
Position (kb)
3527
3528 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3527.144 kb on + strand, within SGL_RS18155 at 3527.156 kb on + strand, within SGL_RS18155 at 3527.308 kb on - strand, within SGL_RS18155 at 3527.362 kb on - strand, within SGL_RS18155 at 3527.377 kb on - strand, within SGL_RS18155 at 3527.444 kb on + strand, within SGL_RS18155 at 3527.459 kb on + strand, within SGL_RS18155 at 3527.538 kb on - strand at 3527.551 kb on - strand at 3527.560 kb on + strand at 3527.695 kb on + strand, within SGL_RS18160 at 3527.724 kb on - strand, within SGL_RS18160 at 3528.045 kb on + strand at 3528.089 kb on - strand at 3528.195 kb on + strand at 3528.224 kb on + strand at 3528.269 kb on - strand at 3528.316 kb on + strand at 3528.356 kb on + strand at 3528.368 kb on + strand at 3528.376 kb on - strand, within SGL_RS18165 at 3528.398 kb on + strand, within SGL_RS18165 at 3528.398 kb on + strand, within SGL_RS18165 at 3528.499 kb on + strand, within SGL_RS18165
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,527,144 + SGL_RS18155 0.18 -0.9 3,527,156 + SGL_RS18155 0.21 -0.9 3,527,308 - SGL_RS18155 0.49 -0.7 3,527,362 - SGL_RS18155 0.59 -0.1 3,527,377 - SGL_RS18155 0.62 +0.4 3,527,444 + SGL_RS18155 0.74 -0.3 3,527,459 + SGL_RS18155 0.77 +0.7 3,527,538 - +1.3 3,527,551 - -0.2 3,527,560 + -0.0 3,527,695 + SGL_RS18160 0.12 -0.0 3,527,724 - SGL_RS18160 0.18 -1.6 3,528,045 + -0.4 3,528,089 - -0.1 3,528,195 + -1.0 3,528,224 + -2.1 3,528,269 - -0.8 3,528,316 + -1.9 3,528,356 + -1.4 3,528,368 + -1.8 3,528,376 - SGL_RS18165 0.11 -1.6 3,528,398 + SGL_RS18165 0.13 -1.8 3,528,398 + SGL_RS18165 0.13 -1.3 3,528,499 + SGL_RS18165 0.22 -2.9
Or see this region's nucleotide sequence