Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18155

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS18140 and SGL_RS18145 are separated by 30 nucleotidesSGL_RS18145 and SGL_RS18150 are separated by 188 nucleotidesSGL_RS18150 and SGL_RS18155 are separated by 70 nucleotidesSGL_RS18155 and SGL_RS18160 are separated by 60 nucleotidesSGL_RS18160 and SGL_RS18165 are separated by 176 nucleotides SGL_RS18140: SGL_RS18140 - class I SAM-dependent methyltransferase, at 3,525,482 to 3,526,066 _RS18140 SGL_RS18145: SGL_RS18145 - rhodanese-like domain-containing protein, at 3,526,097 to 3,526,591 _RS18145 SGL_RS18150: SGL_RS18150 - DUF2892 domain-containing protein, at 3,526,780 to 3,526,974 _RS18150 SGL_RS18155: SGL_RS18155 - cytochrome b6-f complex iron-sulfur subunit, at 3,527,045 to 3,527,581 _RS18155 SGL_RS18160: SGL_RS18160 - DUF2214 family protein, at 3,527,642 to 3,528,088 _RS18160 SGL_RS18165: SGL_RS18165 - hypothetical protein, at 3,528,265 to 3,529,305 _RS18165 Position (kb) 3527 3528Strain fitness (log2 ratio) -3 -2 -1 0 1at 3527.144 kb on + strand, within SGL_RS18155at 3527.156 kb on + strand, within SGL_RS18155at 3527.308 kb on - strand, within SGL_RS18155at 3527.362 kb on - strand, within SGL_RS18155at 3527.377 kb on - strand, within SGL_RS18155at 3527.444 kb on + strand, within SGL_RS18155at 3527.459 kb on + strand, within SGL_RS18155at 3527.538 kb on - strandat 3527.551 kb on - strandat 3527.560 kb on + strandat 3527.695 kb on + strand, within SGL_RS18160at 3527.724 kb on - strand, within SGL_RS18160at 3528.045 kb on + strandat 3528.089 kb on - strandat 3528.195 kb on + strandat 3528.224 kb on + strandat 3528.269 kb on - strandat 3528.316 kb on + strandat 3528.356 kb on + strandat 3528.368 kb on + strandat 3528.376 kb on - strand, within SGL_RS18165at 3528.398 kb on + strand, within SGL_RS18165at 3528.398 kb on + strand, within SGL_RS18165at 3528.499 kb on + strand, within SGL_RS18165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
3,527,144 + SGL_RS18155 0.18 -0.9
3,527,156 + SGL_RS18155 0.21 -0.9
3,527,308 - SGL_RS18155 0.49 -0.7
3,527,362 - SGL_RS18155 0.59 -0.1
3,527,377 - SGL_RS18155 0.62 +0.4
3,527,444 + SGL_RS18155 0.74 -0.3
3,527,459 + SGL_RS18155 0.77 +0.7
3,527,538 - +1.3
3,527,551 - -0.2
3,527,560 + -0.0
3,527,695 + SGL_RS18160 0.12 -0.0
3,527,724 - SGL_RS18160 0.18 -1.6
3,528,045 + -0.4
3,528,089 - -0.1
3,528,195 + -1.0
3,528,224 + -2.1
3,528,269 - -0.8
3,528,316 + -1.9
3,528,356 + -1.4
3,528,368 + -1.8
3,528,376 - SGL_RS18165 0.11 -1.6
3,528,398 + SGL_RS18165 0.13 -1.8
3,528,398 + SGL_RS18165 0.13 -1.3
3,528,499 + SGL_RS18165 0.22 -2.9

Or see this region's nucleotide sequence