Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18130

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18120 and SGL_RS19505 are separated by 51 nucleotidesSGL_RS19505 and SGL_RS18130 are separated by 258 nucleotidesSGL_RS18130 and SGL_RS18135 are separated by 138 nucleotidesSGL_RS18135 and SGL_RS18140 are separated by 31 nucleotides SGL_RS18120: SGL_RS18120 - 5'/3'-nucleotidase SurE, at 3,522,433 to 3,523,260 _RS18120 SGL_RS19505: SGL_RS19505 - hypothetical protein, at 3,523,312 to 3,523,458 _RS19505 SGL_RS18130: SGL_RS18130 - photosystem II q(b) protein, at 3,523,717 to 3,524,799 _RS18130 SGL_RS18135: SGL_RS18135 - isoprenylcysteine carboxylmethyltransferase family protein, at 3,524,938 to 3,525,450 _RS18135 SGL_RS18140: SGL_RS18140 - class I SAM-dependent methyltransferase, at 3,525,482 to 3,526,066 _RS18140 Position (kb) 3523 3524 3525Strain fitness (log2 ratio) -3 -2 -1 0 1at 3522.795 kb on - strand, within SGL_RS18120at 3522.845 kb on - strand, within SGL_RS18120at 3522.861 kb on - strand, within SGL_RS18120at 3522.944 kb on - strand, within SGL_RS18120at 3522.956 kb on - strand, within SGL_RS18120at 3522.956 kb on - strand, within SGL_RS18120at 3523.036 kb on + strand, within SGL_RS18120at 3523.036 kb on + strand, within SGL_RS18120at 3523.036 kb on + strand, within SGL_RS18120at 3523.043 kb on + strand, within SGL_RS18120at 3523.051 kb on - strand, within SGL_RS18120at 3523.064 kb on - strand, within SGL_RS18120at 3523.139 kb on + strand, within SGL_RS18120at 3523.147 kb on - strand, within SGL_RS18120at 3523.186 kb on - strandat 3523.395 kb on - strand, within SGL_RS19505at 3523.401 kb on + strand, within SGL_RS19505at 3523.978 kb on + strand, within SGL_RS18130at 3524.206 kb on - strand, within SGL_RS18130at 3524.214 kb on - strand, within SGL_RS18130at 3524.236 kb on - strand, within SGL_RS18130at 3524.480 kb on - strand, within SGL_RS18130at 3524.597 kb on + strand, within SGL_RS18130at 3524.641 kb on + strand, within SGL_RS18130at 3524.642 kb on + strand, within SGL_RS18130at 3524.649 kb on - strand, within SGL_RS18130at 3524.794 kb on + strandat 3524.865 kb on - strandat 3524.882 kb on - strandat 3525.312 kb on - strand, within SGL_RS18135

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,522,795 - SGL_RS18120 0.44 -0.3
3,522,845 - SGL_RS18120 0.50 -0.7
3,522,861 - SGL_RS18120 0.52 -0.0
3,522,944 - SGL_RS18120 0.62 -0.5
3,522,956 - SGL_RS18120 0.63 +0.2
3,522,956 - SGL_RS18120 0.63 -0.3
3,523,036 + SGL_RS18120 0.73 -1.3
3,523,036 + SGL_RS18120 0.73 -0.7
3,523,036 + SGL_RS18120 0.73 +0.6
3,523,043 + SGL_RS18120 0.74 -0.4
3,523,051 - SGL_RS18120 0.75 -0.4
3,523,064 - SGL_RS18120 0.76 -0.5
3,523,139 + SGL_RS18120 0.85 -0.9
3,523,147 - SGL_RS18120 0.86 -0.5
3,523,186 - -0.4
3,523,395 - SGL_RS19505 0.56 +0.1
3,523,401 + SGL_RS19505 0.61 -0.1
3,523,978 + SGL_RS18130 0.24 +0.6
3,524,206 - SGL_RS18130 0.45 -0.1
3,524,214 - SGL_RS18130 0.46 +0.1
3,524,236 - SGL_RS18130 0.48 -0.6
3,524,480 - SGL_RS18130 0.70 +0.7
3,524,597 + SGL_RS18130 0.81 -1.7
3,524,641 + SGL_RS18130 0.85 +0.1
3,524,642 + SGL_RS18130 0.85 -3.4
3,524,649 - SGL_RS18130 0.86 -0.3
3,524,794 + +0.0
3,524,865 - +0.2
3,524,882 - -0.3
3,525,312 - SGL_RS18135 0.73 +0.5

Or see this region's nucleotide sequence