Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18120 and SGL_RS19505 are separated by 51 nucleotides SGL_RS19505 and SGL_RS18130 are separated by 258 nucleotides SGL_RS18130 and SGL_RS18135 are separated by 138 nucleotides SGL_RS18135 and SGL_RS18140 are separated by 31 nucleotides
SGL_RS18120: SGL_RS18120 - 5'/3'-nucleotidase SurE, at 3,522,433 to 3,523,260
_RS18120
SGL_RS19505: SGL_RS19505 - hypothetical protein, at 3,523,312 to 3,523,458
_RS19505
SGL_RS18130: SGL_RS18130 - photosystem II q(b) protein, at 3,523,717 to 3,524,799
_RS18130
SGL_RS18135: SGL_RS18135 - isoprenylcysteine carboxylmethyltransferase family protein, at 3,524,938 to 3,525,450
_RS18135
SGL_RS18140: SGL_RS18140 - class I SAM-dependent methyltransferase, at 3,525,482 to 3,526,066
_RS18140
Position (kb)
3523
3524
3525 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3522.795 kb on - strand, within SGL_RS18120 at 3522.845 kb on - strand, within SGL_RS18120 at 3522.861 kb on - strand, within SGL_RS18120 at 3522.944 kb on - strand, within SGL_RS18120 at 3522.956 kb on - strand, within SGL_RS18120 at 3522.956 kb on - strand, within SGL_RS18120 at 3523.036 kb on + strand, within SGL_RS18120 at 3523.036 kb on + strand, within SGL_RS18120 at 3523.036 kb on + strand, within SGL_RS18120 at 3523.043 kb on + strand, within SGL_RS18120 at 3523.051 kb on - strand, within SGL_RS18120 at 3523.064 kb on - strand, within SGL_RS18120 at 3523.139 kb on + strand, within SGL_RS18120 at 3523.147 kb on - strand, within SGL_RS18120 at 3523.186 kb on - strand at 3523.395 kb on - strand, within SGL_RS19505 at 3523.401 kb on + strand, within SGL_RS19505 at 3523.978 kb on + strand, within SGL_RS18130 at 3524.206 kb on - strand, within SGL_RS18130 at 3524.214 kb on - strand, within SGL_RS18130 at 3524.236 kb on - strand, within SGL_RS18130 at 3524.480 kb on - strand, within SGL_RS18130 at 3524.597 kb on + strand, within SGL_RS18130 at 3524.641 kb on + strand, within SGL_RS18130 at 3524.642 kb on + strand, within SGL_RS18130 at 3524.649 kb on - strand, within SGL_RS18130 at 3524.794 kb on + strand at 3524.865 kb on - strand at 3524.882 kb on - strand at 3525.312 kb on - strand, within SGL_RS18135
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,522,795 - SGL_RS18120 0.44 -0.3 3,522,845 - SGL_RS18120 0.50 -0.7 3,522,861 - SGL_RS18120 0.52 -0.0 3,522,944 - SGL_RS18120 0.62 -0.5 3,522,956 - SGL_RS18120 0.63 +0.2 3,522,956 - SGL_RS18120 0.63 -0.3 3,523,036 + SGL_RS18120 0.73 -1.3 3,523,036 + SGL_RS18120 0.73 -0.7 3,523,036 + SGL_RS18120 0.73 +0.6 3,523,043 + SGL_RS18120 0.74 -0.4 3,523,051 - SGL_RS18120 0.75 -0.4 3,523,064 - SGL_RS18120 0.76 -0.5 3,523,139 + SGL_RS18120 0.85 -0.9 3,523,147 - SGL_RS18120 0.86 -0.5 3,523,186 - -0.4 3,523,395 - SGL_RS19505 0.56 +0.1 3,523,401 + SGL_RS19505 0.61 -0.1 3,523,978 + SGL_RS18130 0.24 +0.6 3,524,206 - SGL_RS18130 0.45 -0.1 3,524,214 - SGL_RS18130 0.46 +0.1 3,524,236 - SGL_RS18130 0.48 -0.6 3,524,480 - SGL_RS18130 0.70 +0.7 3,524,597 + SGL_RS18130 0.81 -1.7 3,524,641 + SGL_RS18130 0.85 +0.1 3,524,642 + SGL_RS18130 0.85 -3.4 3,524,649 - SGL_RS18130 0.86 -0.3 3,524,794 + +0.0 3,524,865 - +0.2 3,524,882 - -0.3 3,525,312 - SGL_RS18135 0.73 +0.5
Or see this region's nucleotide sequence