Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17820

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17815 and SGL_RS17820 are separated by 504 nucleotidesSGL_RS17820 and SGL_RS17825 are separated by 90 nucleotidesSGL_RS17825 and SGL_RS17830 are separated by 184 nucleotides SGL_RS17815: SGL_RS17815 - histidine phosphatase family protein, at 3,456,238 to 3,456,954 _RS17815 SGL_RS17820: SGL_RS17820 - photosystem I reaction center protein subunit XI, at 3,457,459 to 3,457,932 _RS17820 SGL_RS17825: SGL_RS17825 - photosystem I reaction center subunit VIII, at 3,458,023 to 3,458,145 _RS17825 SGL_RS17830: SGL_RS17830 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 3,458,330 to 3,459,397 _RS17830 Position (kb) 3457 3458Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3456.473 kb on - strand, within SGL_RS17815at 3456.614 kb on + strand, within SGL_RS17815at 3456.614 kb on + strand, within SGL_RS17815at 3456.614 kb on + strand, within SGL_RS17815at 3456.622 kb on - strand, within SGL_RS17815at 3456.692 kb on + strand, within SGL_RS17815at 3456.700 kb on - strand, within SGL_RS17815at 3456.715 kb on - strand, within SGL_RS17815at 3456.720 kb on - strand, within SGL_RS17815at 3456.843 kb on + strand, within SGL_RS17815at 3456.843 kb on + strand, within SGL_RS17815at 3456.843 kb on + strand, within SGL_RS17815at 3456.843 kb on + strand, within SGL_RS17815at 3456.851 kb on - strand, within SGL_RS17815at 3456.851 kb on - strand, within SGL_RS17815at 3456.996 kb on + strandat 3457.119 kb on + strandat 3457.119 kb on + strandat 3457.215 kb on + strandat 3457.233 kb on - strandat 3457.301 kb on - strandat 3457.315 kb on + strandat 3457.315 kb on + strandat 3457.469 kb on - strandat 3457.494 kb on + strandat 3457.599 kb on + strand, within SGL_RS17820at 3457.711 kb on + strand, within SGL_RS17820at 3458.121 kb on + strand, within SGL_RS17825at 3458.204 kb on - strandat 3458.296 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,456,473 - SGL_RS17815 0.33 +0.8
3,456,614 + SGL_RS17815 0.52 +0.7
3,456,614 + SGL_RS17815 0.52 +0.6
3,456,614 + SGL_RS17815 0.52 +1.1
3,456,622 - SGL_RS17815 0.54 +0.4
3,456,692 + SGL_RS17815 0.63 +0.6
3,456,700 - SGL_RS17815 0.64 +0.6
3,456,715 - SGL_RS17815 0.67 +0.6
3,456,720 - SGL_RS17815 0.67 -0.3
3,456,843 + SGL_RS17815 0.84 +1.2
3,456,843 + SGL_RS17815 0.84 +1.5
3,456,843 + SGL_RS17815 0.84 +1.8
3,456,843 + SGL_RS17815 0.84 +1.4
3,456,851 - SGL_RS17815 0.85 +0.5
3,456,851 - SGL_RS17815 0.85 +0.1
3,456,996 + +1.5
3,457,119 + +0.2
3,457,119 + -0.1
3,457,215 + -0.6
3,457,233 - -0.0
3,457,301 - -0.4
3,457,315 + -0.2
3,457,315 + -0.5
3,457,469 - -1.1
3,457,494 + -0.6
3,457,599 + SGL_RS17820 0.30 -1.6
3,457,711 + SGL_RS17820 0.53 -2.7
3,458,121 + SGL_RS17825 0.80 -2.6
3,458,204 - -1.4
3,458,296 + -5.2

Or see this region's nucleotide sequence