Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17645

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17640 and SGL_RS17645 are separated by 2 nucleotidesSGL_RS17645 and SGL_RS17650 are separated by 165 nucleotides SGL_RS17640: SGL_RS17640 - family 10 glycosylhydrolase, at 3,411,849 to 3,413,075 _RS17640 SGL_RS17645: SGL_RS17645 - glycoside hydrolase family 57 protein, at 3,413,078 to 3,414,667 _RS17645 SGL_RS17650: SGL_RS17650 - hypothetical protein, at 3,414,833 to 3,415,525 _RS17650 Position (kb) 3413 3414 3415Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3412.188 kb on - strand, within SGL_RS17640at 3412.463 kb on - strand, within SGL_RS17640at 3412.653 kb on - strand, within SGL_RS17640at 3412.817 kb on - strand, within SGL_RS17640at 3412.913 kb on + strand, within SGL_RS17640at 3412.967 kb on - strandat 3413.054 kb on + strandat 3413.239 kb on + strand, within SGL_RS17645at 3413.242 kb on - strand, within SGL_RS17645at 3413.284 kb on - strand, within SGL_RS17645at 3413.414 kb on - strand, within SGL_RS17645at 3413.444 kb on + strand, within SGL_RS17645at 3413.448 kb on + strand, within SGL_RS17645at 3413.518 kb on + strand, within SGL_RS17645at 3413.538 kb on + strand, within SGL_RS17645at 3413.676 kb on - strand, within SGL_RS17645at 3413.709 kb on - strand, within SGL_RS17645at 3413.916 kb on + strand, within SGL_RS17645at 3414.052 kb on - strand, within SGL_RS17645at 3414.075 kb on + strand, within SGL_RS17645at 3414.485 kb on + strand, within SGL_RS17645at 3414.631 kb on - strandat 3414.662 kb on + strandat 3414.664 kb on + strandat 3414.797 kb on + strandat 3414.803 kb on - strandat 3414.814 kb on + strandat 3414.838 kb on + strandat 3414.902 kb on + strandat 3414.910 kb on - strand, within SGL_RS17650at 3415.045 kb on + strand, within SGL_RS17650at 3415.093 kb on + strand, within SGL_RS17650at 3415.257 kb on + strand, within SGL_RS17650at 3415.424 kb on + strand, within SGL_RS17650

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,412,188 - SGL_RS17640 0.28 +0.7
3,412,463 - SGL_RS17640 0.50 +0.9
3,412,653 - SGL_RS17640 0.66 +1.4
3,412,817 - SGL_RS17640 0.79 +0.7
3,412,913 + SGL_RS17640 0.87 +1.8
3,412,967 - +0.6
3,413,054 + +1.0
3,413,239 + SGL_RS17645 0.10 -1.9
3,413,242 - SGL_RS17645 0.10 +0.3
3,413,284 - SGL_RS17645 0.13 +0.2
3,413,414 - SGL_RS17645 0.21 -1.0
3,413,444 + SGL_RS17645 0.23 -0.9
3,413,448 + SGL_RS17645 0.23 -0.4
3,413,518 + SGL_RS17645 0.28 -0.7
3,413,538 + SGL_RS17645 0.29 -0.5
3,413,676 - SGL_RS17645 0.38 -0.0
3,413,709 - SGL_RS17645 0.40 -0.4
3,413,916 + SGL_RS17645 0.53 -1.1
3,414,052 - SGL_RS17645 0.61 -0.3
3,414,075 + SGL_RS17645 0.63 +0.6
3,414,485 + SGL_RS17645 0.88 -1.0
3,414,631 - -0.2
3,414,662 + +0.4
3,414,664 + +0.2
3,414,797 + -0.5
3,414,803 - -1.3
3,414,814 + +2.1
3,414,838 + +2.0
3,414,902 + -2.9
3,414,910 - SGL_RS17650 0.11 -3.9
3,415,045 + SGL_RS17650 0.31 -2.9
3,415,093 + SGL_RS17650 0.38 -3.0
3,415,257 + SGL_RS17650 0.61 -2.4
3,415,424 + SGL_RS17650 0.85 -3.9

Or see this region's nucleotide sequence