Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17640 and SGL_RS17645 are separated by 2 nucleotides SGL_RS17645 and SGL_RS17650 are separated by 165 nucleotides
SGL_RS17640: SGL_RS17640 - family 10 glycosylhydrolase, at 3,411,849 to 3,413,075
_RS17640
SGL_RS17645: SGL_RS17645 - glycoside hydrolase family 57 protein, at 3,413,078 to 3,414,667
_RS17645
SGL_RS17650: SGL_RS17650 - hypothetical protein, at 3,414,833 to 3,415,525
_RS17650
Position (kb)
3413
3414
3415 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3412.188 kb on - strand, within SGL_RS17640 at 3412.463 kb on - strand, within SGL_RS17640 at 3412.653 kb on - strand, within SGL_RS17640 at 3412.817 kb on - strand, within SGL_RS17640 at 3412.913 kb on + strand, within SGL_RS17640 at 3412.967 kb on - strand at 3413.054 kb on + strand at 3413.239 kb on + strand, within SGL_RS17645 at 3413.242 kb on - strand, within SGL_RS17645 at 3413.284 kb on - strand, within SGL_RS17645 at 3413.414 kb on - strand, within SGL_RS17645 at 3413.444 kb on + strand, within SGL_RS17645 at 3413.448 kb on + strand, within SGL_RS17645 at 3413.518 kb on + strand, within SGL_RS17645 at 3413.538 kb on + strand, within SGL_RS17645 at 3413.676 kb on - strand, within SGL_RS17645 at 3413.709 kb on - strand, within SGL_RS17645 at 3413.916 kb on + strand, within SGL_RS17645 at 3414.052 kb on - strand, within SGL_RS17645 at 3414.075 kb on + strand, within SGL_RS17645 at 3414.485 kb on + strand, within SGL_RS17645 at 3414.631 kb on - strand at 3414.662 kb on + strand at 3414.664 kb on + strand at 3414.797 kb on + strand at 3414.803 kb on - strand at 3414.814 kb on + strand at 3414.838 kb on + strand at 3414.902 kb on + strand at 3414.910 kb on - strand, within SGL_RS17650 at 3415.045 kb on + strand, within SGL_RS17650 at 3415.093 kb on + strand, within SGL_RS17650 at 3415.257 kb on + strand, within SGL_RS17650 at 3415.424 kb on + strand, within SGL_RS17650
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,412,188 - SGL_RS17640 0.28 +0.7 3,412,463 - SGL_RS17640 0.50 +0.9 3,412,653 - SGL_RS17640 0.66 +1.4 3,412,817 - SGL_RS17640 0.79 +0.7 3,412,913 + SGL_RS17640 0.87 +1.8 3,412,967 - +0.6 3,413,054 + +1.0 3,413,239 + SGL_RS17645 0.10 -1.9 3,413,242 - SGL_RS17645 0.10 +0.3 3,413,284 - SGL_RS17645 0.13 +0.2 3,413,414 - SGL_RS17645 0.21 -1.0 3,413,444 + SGL_RS17645 0.23 -0.9 3,413,448 + SGL_RS17645 0.23 -0.4 3,413,518 + SGL_RS17645 0.28 -0.7 3,413,538 + SGL_RS17645 0.29 -0.5 3,413,676 - SGL_RS17645 0.38 -0.0 3,413,709 - SGL_RS17645 0.40 -0.4 3,413,916 + SGL_RS17645 0.53 -1.1 3,414,052 - SGL_RS17645 0.61 -0.3 3,414,075 + SGL_RS17645 0.63 +0.6 3,414,485 + SGL_RS17645 0.88 -1.0 3,414,631 - -0.2 3,414,662 + +0.4 3,414,664 + +0.2 3,414,797 + -0.5 3,414,803 - -1.3 3,414,814 + +2.1 3,414,838 + +2.0 3,414,902 + -2.9 3,414,910 - SGL_RS17650 0.11 -3.9 3,415,045 + SGL_RS17650 0.31 -2.9 3,415,093 + SGL_RS17650 0.38 -3.0 3,415,257 + SGL_RS17650 0.61 -2.4 3,415,424 + SGL_RS17650 0.85 -3.9
Or see this region's nucleotide sequence